Polyodon spathula (Mississippi paddlefish): 121303880
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Entry
121303880 CDS
T07273
Name
(RefSeq) protein Smaug homolog 2-like isoform X1
KO
K27396
protein Smaug
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121303880
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121303880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
CC_CDK5RAP2
PHC2_SAM_assoc
Motif
Other DBs
NCBI-GeneID:
121303880
NCBI-ProteinID:
XP_041090665
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All DBs
Position
35:complement(3721448..3756256)
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AA seq
683 aa
AA seq
DB search
MMFRDQVGILTDWFKGWNECEQTVALLSLLKRVTRTQARFLQICLEHSLSDCTEIHILEA
EANNAAIVSQWYQEPKEKVVSQLLSHLPLLQPHNAEAKDEYMKLLQKVLSYTIESNLFVE
ESRQLLSYALIHPATTVEDRTTLAMWLNHLEEHLSTGYLGRASSSSSFSSGYHPRQGSDE
WMGSQSEIMDPGNVWQDKPATTGQNGHMTFHVSTSVPSAMNSIGSNANTVLTSQIHPSPL
KRSMSLVPTSLQVSGGDWTSQEDLGIRGSYVSSDHAPLSPQSSVASSGSEQTEDQGMGRN
TFQEEGSGMRDVPTWLKSLRLHKYAALFSQMTYEEMMTLTEHHLESQVWNVTKGARHKIA
LSIQKLRERQSVLKSLEKDILEGGNLRNALQELQQIIITPIKVHSTPQASQKEADSASQA
PQKGGKQGEDKDQATEGFQSQNPSPCDAEPSAAPIHEGDIAGQFTRVMGKVCTQLLVSRP
DEENISCYLQLIEKCLTHEAFTETQKKRLVSWKQQVLKLLRMFPRKTMLDMPGYRQKGWA
YGSNSLPTAGSVGAGLGRRGQRQFQMPPRGLPPSRMGLLSPAGIGGASPRHTLTSPALGG
QGRQSLWFANPGGSNSMPSQSRSSVQRTHSLPVHTSPQAMLMFQQPECQVPGTDLEINPT
LESLCLSMTEHALGDGMDRTSTI
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgagaccaggtggggatcctcacggattggttcaaaggctggaatgagtgt
gaacagacggtggcgctcttatcactgctcaagagggtgactcggactcaggctcgattt
ctgcagatctgtctggagcactcgctgtccgactgcacggagatccacatcctagaagcc
gaggcaaacaatgctgcgatcgtcagccagtggtaccaggagcccaaggagaaggtggtc
tctcagttgctctcccacctgccgctgctgcagccccacaatgctgaggctaaggacgaa
tacatgaagctgcttcagaaagtgctcagctacaccatcgagagcaacctgtttgtggag
gagagccggcagctgttgtcctacgccctgatccacccagccacgaccgtggaggaccgc
accaccctagccatgtggctcaatcacctggaggagcacctttccactggctacttgggc
agagcatcttcctcctcctctttctcttctggctaccacccccggcagggctccgacgag
tggatgggcagccagtctgagatcatggacccaggcaatgtgtggcaggacaaaccagcc
accacagggcagaacgggcacatgaccttccacgtgtccacttctgtgccgtctgccatg
aacagtatcgggagcaacgccaacacagttctcacaagccaaatccaccccagccccctg
aagagatccatgtccctggtgcccacaagcctgcaggtgtcaggcggcgactggaccagc
caggaggatctgggcatccgggggtcctatgtgtcctcggaccacgcgcctctctcgcct
cagagcagcgtggcgtcctcgggcagcgagcagactgaggatcaggggatgggacggaac
accttccaggaggaaggcagcgggatgagagatgttcctacatggcttaaaagccttcgt
ctacataaatacgcagcacttttctcacagatgacctacgaggaaatgatgacacttacc
gagcatcacctggagtcacaggtttggaatgttacaaagggagctcgacacaagattgcc
ctgagcatccagaaactgagggagagacagagcgtcctgaagtctttggagaaggacatt
ctggagggagggaacctacgaaacgcactgcaggagcttcaacagatcatcatcacgccc
atcaaagtgcatagcacgccacaggcatctcagaaagaggctgactccgcctcccaagca
cctcagaagggaggcaagcagggggaggacaaggaccaggccacagagggcttccaatcc
caaaatccctctccctgtgacgcagaaccgtcagcagcgcccatccatgagggagacatt
gcgggtcagtttactagagtcatgggaaaagtctgcactcagcttctagtttcgagaccg
gatgaagaaaacataagctgctacctgcagctcattgaaaagtgtctaacacatgaggcg
ttcacagaaacccagaaaaagaggctggtctcctggaagcagcaagtgctgaagctgctg
agaatgttcccccggaagaccatgcttgacatgccaggttaccgacagaaaggctgggca
tatgggtcgaactccctccccacagcaggctctgtgggagccgggcttggccgtcggggg
cagaggcagttccagatgccccctcgagggctgccccccagccgcatggggctgctgagt
ccagcgggcattggtggggcctcccccagacacaccctcaccagcccggcgctagggggt
cagggcaggcagagcctgtggtttgctaaccccgggggcagtaacagcatgcccagccag
agccgcagctcagtccagaggacacactcgctgcccgtccacacttctccacaagccatg
cttatgttccaacagcctgagtgccaagttccagggactgacttggagatcaatcccaca
ctggagtcactgtgtctcagtatgacagaacacgccttaggagatggcatggacagaaca
tcaactatctga
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