Polyodon spathula (Mississippi paddlefish): 121303908
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Entry
121303908 CDS
T07273
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121303908 (npas1)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121303908 (npas1)
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
121303908
NCBI-ProteinID:
XP_041090703
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Position
35:3048779..3090111
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AA seq
783 aa
AA seq
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MAVAPFVSEGKCVSVEWDFLQGLLVKNPPVPCLQSLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLSISYLRIRDFCRQGEPPWSPLLEGGPHNKAMGRTRMSPA
TDLFEHHLGGHLLQSLDGFAFVVSHEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMADRLGMRAHRRGVSQATNENTSSSASTSSLAETPEPEVPSPLPPEDSPYRSFFIRM
KSTLTKRGLHIKSSGYKVIHVTGRIRCQSTHSSTPSVQRELGLVALAHTLPPSTLNEVRM
ESHMFVFRVNMDLQVIYCENRIAEYMDLSPTEVIGQSCYHFIHVEDVDSIRQSHEDLLVK
GQVVTGYYRWLQRRGGFLWIQSCATISFNHKSPQDRNIIWVNYVLSRPELLDTPLDLQQL
PESSRPSREAQATDDCPQDAKGKDTATPQSLDSGNASKLRLEYPRESHSEERRKRSRQCV
SVEGPPETRAKGNRSPLSSELESESESGRQAEPVSKHIKVEERRLESGGSEEEEEEEEEE
EEEEEGRTPNGCAVIQHRKCPSTSSFSEPEIKTEQTGSGVTSGIWGFHSLPCIPVDTHTP
GPENGHSHGNGSQICIPESVLTPPGGEAPPKALFTPSVEALSPPLSGSPLSREERLFPAP
STPDFELLQRLGFGGGVSGLGGISRVVLPLPRSMGGPTPHSLYAPSTIRYAPAELHLPQA
GAHHQLHSLNSPDLQADPKPLFPHLQRLSGLPPFSGFHALDTPFSALSFINGLRGPATDK
DED
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggcaccgtttgttagcgaggggaagtgcgttagcgtagagtgggacttcttg
caggggctgctggtcaaaaacccgcccgttccgtgcctgcagtctctgcgcaaggagaaa
tcgcggaacgccgctcgctcacgccggggaaaggagaatttcgagttcttcgaattggcc
aagatgctgcccctgccgggcgccatcaccagccaactggacaaggcctccgtcatccga
ctgagcatcagctacctgcgcataagagacttctgcaggcaaggagagccaccttggagt
cccctgctggagggaggaccacacaacaaggctatggggaggacgcggatgtcaccggcc
actgatctcttcgagcatcacctggggggacacctgctacagtcgctagatggcttcgcc
tttgtggtcagtcacgagggaagatttctctacatctctgagacggtgtccatctacctt
ggtctctcacaggtggagctaacaggcagcagtgtctttgactacatccaccccgcagac
catgtggagatggctgatcggctaggaatgagggcgcaccgcaggggtgtgtcccaggca
accaatgagaacacatccagctcggcatccacctcttcattggctgagacgccagagcca
gaagtccccagccccctccccccagaggactctccctatcgcagcttcttcatccggatg
aaatccaccctcacaaagcgggggctgcacatcaagtcatccggatacaaggtgattcat
gtgacaggcaggattcgttgtcagtccacccacagctccaccccctcagtgcagcgtgag
ctggggttggtggcactggctcacacgctcccgccttccactctcaatgaagtgcgcatg
gagagtcacatgtttgtcttccgggtcaacatggatctgcaggtcatctactgtgagaac
aggatcgcggagtacatggatctgagcccgacagaggtgattgggcagagctgctaccac
ttcattcacgtggaggacgtggactcaatccgacagagccacgaggacttgctagtgaag
ggtcaggtggtgactgggtattatcgttggctccagcggcgcggtgggttcctgtggatc
cagtcctgtgccaccatctccttcaaccacaagtccccccaagacaggaacatcatctgg
gtcaactacgtgcttagccggccggagctcctggacactcccctggatctccagcagctg
cccgagtcctctcgcccatccagagaggcccaggcaacagatgactgcccacaagatgca
aagggtaaagacactgcaactccccagagcttggacagcggcaatgcatcaaagttaaga
cttgagtacccccgagagagccattccgaggagaggaggaagaggagccggcagtgcgtc
tctgtggaaggtcccccagaaacaagggctaaggggaaccggagccctttgtcctccgaa
ctggaaagtgaaagtgagagtgggaggcaggcagaacctgtgtccaagcacatcaaagtg
gaagagaggcgactggagtctggcggcagtgaggaggaggaggaggaggaagaggaggag
gaggaggaggaggaagggaggaccccgaatgggtgtgcagtgatccagcacaggaaatgc
ccttccacatcttccttctcagaacccgagatcaaaacggagcaaactgggagtggtgtc
acttcaggaatctgggggttccattctctcccttgcattccagttgacactcatacccct
gggcctgaaaatgggcactcgcatgggaacggctctcagatctgcattcctgaatccgtc
ctgaccccccctggaggagaggcccctcctaaagccttgttcaccccctctgtggaagct
ctctccccaccgctctccggttctcctctctcccgggaggaaagactatttcccgctccc
tctacacccgatttcgaacttctgcagaggctggggttcgggggaggagttagtggcctg
ggagggatcagtcgggtggtcctccctttgcctcggtctatgggaggccccacccctcac
agcctgtatgccccaagcacaatccgctatgccccagctgagctccacctgccccaggct
ggggcccatcaccagctccactccttgaactccccagacctccaggcagatcccaagccg
ctgttcccccacctccagaggcttagtgggttgcctcctttcagtggcttccatgccctg
gacacccccttctcagctctgtccttcatcaacgggctccgtggtcctgcaactgataaa
gacgaagactga
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