Polyodon spathula (Mississippi paddlefish): 121304011
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Entry
121304011 CDS
T07273
Symbol
nectin1b
Name
(RefSeq) nectin cell adhesion molecule 1b isoform X1
KO
K06081
poliovirus receptor-related protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03266
Virion - Herpesvirus
pspa04514
Cell adhesion molecule (CAM) interaction
pspa04517
IgSF CAM signaling
pspa04520
Adherens junction
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
121304011 (nectin1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121304011 (nectin1b)
04517 IgSF CAM signaling
121304011 (nectin1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121304011 (nectin1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121304011 (nectin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121304011 (nectin1b)
04090 CD molecules [BR:
pspa04090
]
121304011 (nectin1b)
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
Nectin family
121304011 (nectin1b)
CD molecules [BR:
pspa04090
]
Proteins
121304011 (nectin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
V-set
Ig_3
Ig_2
I-set
ig
Insulin_TMD
Ig_PVRIG
TM_ErbB1
DUF4786
Motif
Other DBs
NCBI-GeneID:
121304011
NCBI-ProteinID:
XP_041090870
LinkDB
All DBs
Position
36:complement(1114715..1193409)
Genome browser
AA seq
553 aa
AA seq
DB search
MGGEIAVQLHPVVSAAFSALAIYYYYYYFFFRYLYFPQMKTHSQRKTRRFQDRDMAALIL
PSFWISLLAVTLSAAQSQVVQVDDSVSGFVDTEVVLSCTFSNTNPNVKITQVTWQKLLNG
TKQNVAIANPTMGVSVLPPYKDRVTFRNPAVGYRTPSLEDATIRLSGLRLSDEAAYICEY
ATFPTGNRENQLNLTVLAKPVIQMTLTSPTIIAQAGQTSKKTVATCVSSNGKPPSVITWE
TKLKGEPTFQETRNPNGTVTVRSNYLVVPSREIHQQQLTCIVNYQSERTTHSLTLNVLYE
PEVTIEGFDGNWYLNRQDVKLTCKSDANPPVTVYQWKLLNGTMPVNVEVLNSTLFFKGPV
TSDLAGTYVCEAANVIGTRSGLVEVNVTEFPNIPGGPRIPPDEPSSGPVAVIGCAVGGVI
LLGLVAVVLFVFLRRRQRTFKGDYNTKKHVFGNGYSKAAGLPHHPPMPQSLQYPDDSDDE
KKPAAISGLGVEQDFDPDSEDLKRPYFTVDEGESHEDFDGRTLSFQYDPEPEITDDMVSQ
NDGSVISKKEWYV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggaggagagatcgcagtacagctgcatccagtcgttagcgctgctttctccgcgctc
gctatttattattattattattattttttttttagatatttatattttccccaaatgaaa
acacattcgcagcggaaaacccggagatttcaggacagagacatggccgcgttgatactg
cccagtttctggatatccctgctggctgtaactttatcagccgcacaatcccaggtggtc
caagtggacgacagcgtgtccggcttcgtggacacagaagtggtcctgagctgcaccttc
tcaaacaccaaccccaacgtgaagatcacgcaggtcacctggcagaagctgctcaatggc
accaagcagaacgtggccatcgccaaccccaccatgggcgtgtccgtgctgccgccgtac
aaggaccgcgtgaccttccgcaaccccgccgtggggtaccgcaccccctccctggaggac
gctaccatacgcctgtccggcctgaggctgtccgacgaggctgcttacatctgcgagtac
gcgaccttcccaaccggcaaccgggagaaccaactcaacctcaccgtgctggccaaaccc
gtcattcagatgacgctgacctccccaaccattatagcccaggccggtcagaccagtaag
aagacggttgccacctgcgtctcgtccaatggcaagcccccgagcgtgatcacctgggag
acgaagctgaagggggaacccaccttccaggagacgcgcaacccgaacggcacggtgacc
gtgcgcagcaactacctggtggtgccgagtcgagagatccaccagcagcagcttacctgc
atcgtgaactaccaaagcgagaggactacccacagcctcaccctcaacgtgctctacgag
cctgaagtgactattgaaggatttgatggaaactggtacctgaaccgacaagacgttaag
ctcacctgcaagtctgacgccaaccctccagtcactgtgtaccagtggaagctgctgaat
ggtacgatgcccgtcaacgtggaggtcctcaacagcaccctgttcttcaaggggcccgtg
acgagcgatttggctggaacatacgtgtgcgaggctgccaacgtgatcgggacacgctcc
gggcttgtggaggtcaacgtcacagaattccctaacattcccgggggccccaggatcccg
cccgatgagcccagttctggcccggtggcagtcatcgggtgcgctgtggggggagtgatc
ctgctggggctggtggccgtggtgctcttcgtgttcctgcggaggcgccagcgcaccttc
aagggcgactacaacaccaagaagcacgtgttcgggaatggctacagcaaagcggctggg
ctgccccatcaccccccgatgccccagagcctgcagtaccccgacgattctgatgacgag
aagaagccggcagccatcagcggcctaggggtcgagcaggatttcgaccccgactcagag
gatctgaagaggccctacttcacggtggacgaaggcgagagccatgaggatttcgacggg
cggactctctctttccagtacgacccggagcccgagatcacagacgacatggtctctcag
aacgacggctcggtcatttctaagaaagagtggtacgtgtag
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