Polyodon spathula (Mississippi paddlefish): 121304031
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Entry
121304031 CDS
T07273
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121304031 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121304031 (mtrex)
03041 Spliceosome [BR:
pspa03041
]
121304031 (mtrex)
03009 Ribosome biogenesis [BR:
pspa03009
]
121304031 (mtrex)
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121304031 (mtrex)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121304031 (mtrex)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121304031 (mtrex)
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121304031 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
121304031 (mtrex)
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121304031 (mtrex)
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121304031 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121304031
NCBI-ProteinID:
XP_041090917
LinkDB
All DBs
Position
2:93888850..93947929
Genome browser
AA seq
1029 aa
AA seq
DB search
MADAFGDDLFSVFEQEENASTKKRKEANSGSRPGKSPHGKPKADNIAKSKRDLENDGNDE
IIFGKKPKLETISAEEINLADLMPKVKVEQVETVEGCTHEVALPADEEYTQLKPRVGKAA
KEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFNDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVVFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQACHVIYTDYRP
TPLQHYIFPAGGDGLHLVVDESGEFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNTDEEKKLVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGVGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPA
RTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAIGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVERVKKLEEQYN
EIEIPNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLAKVKNDEDDFGWGV
VVNFSRKSNVKASTGDLDPLYVVEVLVHCSKESVKNAATDAAKPVKPGEKGEMQVVPVML
HLLRAISSVRLYIPKDLRSFDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHTLHNDPNLEAVYNLCEKKAQIAGDIKTAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVGCEISSADELLLTEMIFNGLFNDLTSEQATALLSCFV
FQENASEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEEMYLNSFRPHLMDVVYTW
ANGSTFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggagacgatttgttcagcgtgtttgaacaagaggaaaatgcaagc
accaagaaacgaaaagaagccaacagtggaagcaggcctgggaaatctccacatggcaaa
cctaaagcagataatattgcaaaaagcaagcgtgacctggagaacgatggaaatgatgaa
ataatatttgggaagaagccaaagcttgagacgatatctgcagaagaaataaatcttgca
gatctcatgcccaaagttaaggtggaacaggtggagactgtagaaggctgtacacatgag
gtggctctgccagcagatgaagagtatactcagttgaaacctcgtgttggaaaagcagca
aaggagtatcccttcattctagatccttttcagagggaggctattttatgcattgacaat
aaccagtctgtcttggtatctgcccatacttcagcaggaaaaacagtatgtgccgagtat
gctattgcccttgctttgagggagaagcagcgagtgatattcaccagtcctattaaggcc
ttgagcaaccagaaatacagagagatgtatgaggagttcaacgatgtgggcttaatgact
ggtgatgtcaccattaaccctacagcttcatgtcttatcatgaccacagagattttaaga
agtatgctgtacagaggatcggaggtgatgagagaagtagcatgggttgtatttgatgaa
atccattacatgagagactcagagcgtggtgtggtttgggaagaaaccattattcttctt
cccgacaatgttcactatgtgtttttatcggccaccatccccaatgcacggcagtttgct
gaatggatctgccatcttcacaaacaggcctgccatgtaatctacacagactatcgacct
acaccactgcaacactacatctttccagcagggggtgatggacttcacttggttgtggat
gaaagcggagagttcagagaagataatttcaacacagccatgcaagtgttgagagatgca
ggtgacctggcaaagggagaccagaagggccgtaaaggaggaactaaaggaccatcaaat
gtgttcaagattgtgaagatgatcatggaaaggaactttcagcctgtcattatcttcagt
ttcagtaagaaagactgtgaagcctatgcactgcaggtttctaagctggacttcaataca
gatgaagaaaagaagcttgtggaagaggtcttcaacaacgccattgactgcttgtcggat
gaagacaaaaaacttccccaggttgagcatgtgttgccactgttgaagagaggagtaggg
atccatcatggtggtttgcttcctatcctgaaggaaactattgagattctgttctctgaa
ggcctactgaaggcattgtttgcaacagagacatttgccatgggaatcaacatgccagcc
aggacagttttgttcacaagtgcccgcaagtttgatggaaaagattttcgttggattact
tcaggggaatatattcagatgtctgggcgtgctggcagacgtggcatggacgaaagagga
atagttattttcatggttgatgaaaaaatgagcccagcaattggaaagcaacttcttaag
ggttctgctgatcctctcaacagtgctttccatttgacctataacatggtgttaaacttg
ctgcgtgttgaagagattaaccctgaatacatgttggaaaagtctttctaccagtttcag
cattacagagctgtcccaggagtagtggagagggtgaagaaactagaagagcaatacaat
gaaattgaaatccccaatgaagagagcgtggtcacctactacaaaattcgacagcagctg
gctaaactcggaaaggagattgaagaatacattcacaaaccaaaatactgtttgcctttc
ctgcagcctggaagactcgccaaggtgaaaaatgatgaagacgactttggttggggagtg
gttgtaaacttctccaggaaatcaaatgtgaaggctagtactggagacctggaccccttg
tatgtggtagaggtgctagttcattgcagcaaggagagtgtgaagaatgctgccacagat
gctgccaagccagtgaagccaggagagaaaggggagatgcaggttgttcctgtcatgctg
catcttctccgtgcaatcagctctgtcaggctatatattccaaaagaccttcgctcattt
gacaacaggcaaagtgtgctgaagtccattcaggaagtccagaagcggttccctgatgga
gtacccctgttagatcctattgatgacatgggaatcaaagaccagggactgaaaaaagtg
attcagaaagtggaggcctttgaacacagaatgtactcccatactctacacaatgaccca
aacctagaggctgtgtacaatctctgtgagaagaaggcacagatcgcaggggacattaag
actgcgaagcgtgagctgaagaaagcgaggacagttttgcagatggacgagctgaaatgt
agaaaacgtgttctaagaagattaggatttgcaacttcatctgatgtcattgagatgaaa
gggcgtgttggttgtgagattagcagtgctgatgagcttctcctcacagagatgatcttc
aatggacttttcaatgatcttacttcagaacaagccacagctttgcttagctgttttgta
tttcaggaaaatgccagtgaaatgccgaaactgaccgaacaattggcaggaccgcttcgg
cagatgcaggaatgtgcgaagcgtatagccaaagtatcggcagaagctaaactcgaaatt
gatgaagaaatgtaccttaattcattccgtccccacttgatggatgtggtctacacatgg
gccaatgggtccacattttctcagatctgcaaaatgacagatgtttttgaaggtagcatc
attcgttgcatgaggcgcttggaggaactgctgagacagatgtgtcaggctgcaaaggcc
ataggaaacacggaactggagaacaagtttgcagaaggtatcacaaagatcaagagagac
attgtgtttgctgccagcctttatttgtag
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