Polyodon spathula (Mississippi paddlefish): 121304310
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Entry
121304310 CDS
T07273
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03320
PPAR signaling pathway
pspa04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121304310
03320 PPAR signaling pathway
121304310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121304310
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121304310
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121304310
Nuclear receptors [BR:
pspa03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121304310
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121304310
NCBI-ProteinID:
XP_041091308
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Position
37:3271934..3289142
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AA seq
452 aa
AA seq
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MGDSRDCRSPDSSSVSSPAAQRSPPLPPLPPAAMTSSLNSPISSLGSPFSVISSSIGSPS
LPSTPSIGYGPISSPQINSTVSMSGRHAVSSSDDVKPPFGLKGVPAHSPGPMTSQKRLCA
ICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLVDKRQRNRCQYCRYQKCL
AMGMKREVVQDERQRTVQEERQRNKEKEGEVESTSGLNEEMPVEKILDAEMAVEQKTELH
ADGTASTANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLI
ASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL
RAIILFNPDAKGLSNPSEVELLREKVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGL
KCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagccgagactgtagaagtccagacagttcttcggtcagctctcctgcagcc
cagcgcagcccccccctgcctcccctcccccccgctgccatgacctcatcgctgaactct
ccaatcagcagcctggggtctcccttctctgtcatcagctcctccattggctctcctagc
ctgcccagcaccccttctatcggctacggacctatcagcagcccccagattaactccaca
gtcagcatgtcggggcgccacgctgtcagcagctcggatgacgtcaagcccccctttgga
ctcaagggcgtgccagcgcacagcccgggacccatgacgtcacagaaacggctctgcgcg
atctgtggggacaggtcctcgggtaagcactatggtgtgtacagctgcgaaggctgtaag
ggtttcttcaagcgcacagtgcggaaggacctcacctacacctgcagagacaacaaggac
tgcctggtggacaagcggcagaggaaccggtgccagtactgccgctaccagaaatgcctg
gccatgggcatgaagagggaagttgtccaagatgaacgacagcgcactgtgcaggaggag
aggcagcgcaataaggagaaggagggcgaggtggagtccaccagcgggttgaacgaggag
atgccagtggagaagatcctggatgcagagatggccgtggagcagaaaacagagctgcat
gccgatggcacagccagcacagcaaactctcccaatgaccccgtcactaatatctgccag
gcggctgacaagcagctcttcaccctggtggagtgggccaagaggatccctcacttctca
gagctgccgctggacgaccaggtcatcctgctcagagcaggctggaacgagttgctcatt
gcctcgttctctcatcgctccatcactgtgaaggacggtattttgctggcgactggttta
catgtgcatcggaacagcgcgcacagcgctggagtgggggccatctttgacagggtgctg
actgagctcgtctccaagatgagagacatgcagatggacaagactgagctaggctgcctg
cgagccatcatactattcaacccagatgcgaaggggctgtctaaccccagtgaggtggag
ctgctgagagagaaggtctacgcttccctggagtcctactgcaagcagagatacccagac
cagcagggcaggttcgctaagctcctcctccgcctgccagcgctgcgctcgattggtctg
aaatgcctggagcacctgttcttcttcaagctgattggagacactcccatcgacaccttc
ctcatggagatgctggaggcaccacaccagctcacgtag
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