Polyodon spathula (Mississippi paddlefish): 121304382
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Entry
121304382 CDS
T07273
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121304382 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121304382 (dhx16)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121304382 (dhx16)
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121304382 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
121304382
NCBI-ProteinID:
XP_041091416
LinkDB
All DBs
Position
37:complement(514939..530284)
Genome browser
AA seq
1061 aa
AA seq
DB search
MAGLEQWVSDQLHEILGLSDKYVSQFLIGTARRSSSGADFIQRLRDTGTIDIDHRITAFA
ELLYSKIPKKQAVEKPARAVERHAVEMERKNRTYTLLEESESEGESQIVEEEEKRRKRKK
EEGRERKRKHLRQKRAASSSSSEESGSEKSGRLASQAQLGGKRDGEEEEEEEWEKEERER
LQDLEERDAFSERMKKRDKEKTRHVLERSDKKGYEEAQKRLKVAEEGQREMLPELRKKSR
RDYLAKREAEKLEDLEAEIMDEEYLFSNQELTAHEKEALKYKKTVRDLAKEYKKAGQQEK
LEKSNRYYMPEETRSKTVPERYVEPESEGGTGWAPRDEQRRWEEEQLGAAALRFGARDAQ
ERGKKERERYQLVMEDEEMIDFVSMVTMKGTVDKDEKGDSELSEAQKQRLSIQEVRRSLP
VFPFRQDLLAAIREHQVLIIEGETGSGKTTQIPQYLVEEGYTENAMKIGCTQPRRVAAMS
VAARVAQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFMTEPDLASYSVVVID
EAHERTLHTDILFGLIKDIARFRPDLKVLIASATLDTERFSAFFDDAPVFRIPGRRFPVD
IFYTKAPEADYLEACVVSVLQIHVTQPQGDVLVFLTGQEEIEACCELLQERCRRLGSKIS
ELLVLPIYANLPSDMQSKIFEPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSY
NARTGMESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAYKHEMEESTVPEIQRTNL
GNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPV
DPMLSKMVLASEHYRCSEEILTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLV
LLNVYTQWVESGYSTQWCYENFIQFRSMKRARDIREQLEGLMERIEIELTSSPEDIVPIR
KAVTAGFFYHTARLSKSGYRTVKHQQTVYVHPNSSLFEEQPRWIIYHELVFTTKEFMRQV
IEIDSAWLLEVAPHYYKAKELEDPSSKKMPKKVGKSREELG
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtttggagcagtgggtgagcgaccagctgcacgagatcctgggcctcagtgat
aagtatgtgtcccagttcctgatcgggacggcccgccgcagcagcagtggagccgacttc
atccagcggctgagagacacgggaactatcgacattgaccacaggatcactgccttcgct
gagctcctctacagcaagatccctaagaagcaggcagttgagaagccagcccgagcagtg
gagagacacgccgtggagatggaacgcaagaacagaacctacaccctgctggaggaaagc
gaaagcgagggagagagccaaatagtggaggaggaggagaagaggaggaagaggaagaag
gaggaagggagggagagaaagaggaagcacctgcgacagaaacgggcagcctcgtcgtca
tcgtcggaggagagtgggagcgagaagagtgggaggctggcttcccaggctcagctggga
ggcaagcgggatggagaggaggaggaggaggaggagtgggagaaagaggagagggagcgg
cttcaagacctggaggagagggatgccttttcggagagaatgaagaagagagacaaggag
aagaccaggcatgtgctggagagatccgacaagaagggttatgaagaagctcagaagagg
ctcaaggtggcagaagaaggccagagagaaatgctcccagagttgcgtaagaagtcgcga
cgggattacctggcgaagcgcgaggcggagaaactggaagacctggaggcagagataatg
gatgaggagtacctcttctccaatcaggagctgactgcacacgagaaggaggctcttaaa
tacaagaagactgtccgagaccttgccaaggagtacaagaaagcagggcagcaggagaaa
ctggaaaagagcaaccgatactacatgcctgaggagaccaggagcaagacagtcccagag
cgctatgtggagccagagtcggaggggggtacgggctgggccccgcgggatgagcagagg
cgctgggaggaggagcagctaggggccgccgcgctgagattcggggcgcgggacgctcag
gagagggggaagaaagagagagagagataccagctggtgatggaggacgaggagatgata
gactttgtcagcatggtgaccatgaagggaacagtggacaaggatgagaagggagactct
gagctctcggaggctcagaagcagagactgtcgatccaggaggtgcggcgcagcctccca
gtgttcccattcagacaggacttgctggcagctatcagagagcaccaggtcctcatcatc
gagggggagacagggtctggcaaaaccacccagataccgcagtacctggtggaggagggc
tacacagagaacgcaatgaagatcggctgcactcagcccaggagagtggctgctatgagc
gtggctgctcgtgtggcacaggaaatgggggtcaagctggggaacgaggtggggtacagt
atccggtttgaggactgcacctcagagcgcacggttctcaagtacatgaccgacggcatg
ctgctgagagagttcatgacagagcctgacctggccagctacagcgtggtggttatcgac
gaggctcatgagcgcactctgcacacggacatcctgttcggtctgatcaaggatatcgcg
cgcttccggcccgacctcaaggtgctgattgccagtgccaccctcgacaccgagcgcttc
tctgccttctttgacgacgcgcccgtcttcaggatcccgggccgtaggttcccagtggac
atcttctacaccaaggctcctgaagcagactacctggaggcctgtgtcgtctcagtgctg
cagatccacgtcactcagccccagggcgatgtgttggtatttctcactggacaggaggag
attgaggcgtgctgtgagctgctccaggaacgctgtcggcgtctgggctccaagatcagc
gagctcctggtgctgcccatctacgccaacctgccctccgacatgcagtccaagatattc
gaacccacgccccccggggccaggaaagttgtcgtggcgacgaacatcgccgagacctcc
ctcaccatcgacggcatcatctacgttatcgatcctggcttctgcaaacagaagagctac
aacgccaggacgggcatggagagcctcatagtcacaccctgctccagggcctcagccaat
cagcgtgcaggtcgtgcagggcgcgtggcggcaggaaagtgcttccggctctacacagcc
tgggcctacaagcacgagatggaggagagcaccgtgccggagatccagaggaccaacctg
ggcaacgttgtgctgctgctcaagagcctgggtatcaatgatctgatccactttgacttc
atggacccccctcctcatgagaccctggtcctggctctggagcagctctatgccctggga
gccctcaatcacctaggggagcttaccaagctgggacgcagaatggctgagctcccggtc
gaccccatgctttccaaaatggtcctggcgtccgagcactatcggtgctctgaggagatt
ctgaccattgcagccatgctgtcggtcaacaactccatcttctaccggcccaaggacaaa
gtggtccacgctgacaatgcgcgcatgaacttcgtggtgccgggcggagatcacctggtg
ctgctcaatgtctatacccagtgggtggagagtggctactccactcagtggtgctatgag
aacttcatccagttccgctccatgaaacgggcccgcgatatccgggagcagctggagggg
ctgatggagaggatcgagatcgagctgacctccagcccagaggacatcgtccccatccgc
aaggcagtcacagctggtttcttttaccacacggcacgcctctccaagtcggggtaccgc
acggtgaagcaccagcagactgtgtacgtgcaccccaacagctctctctttgaggagcag
ccgcgctggatcatctaccatgagctggtcttcaccaccaaggagtttatgagacaggtc
attgagatcgacagcgcctggctgcttgaagtggctcctcattattacaaggccaaagaa
ctggaggatccatccagcaagaaaatgcccaagaaagtggggaagagcagggaagagctg
ggctga
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