Polyodon spathula (Mississippi paddlefish): 121304397
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Entry
121304397 CDS
T07273
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121304397 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
121304397 (ddx39b)
03015 mRNA surveillance pathway
121304397 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121304397 (ddx39b)
03041 Spliceosome [BR:
pspa03041
]
121304397 (ddx39b)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121304397 (ddx39b)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121304397 (ddx39b)
Spliceosome [BR:
pspa03041
]
Complex C
Other components
EJC/TREX
121304397 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121304397 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
121304397
NCBI-ProteinID:
XP_041091449
LinkDB
All DBs
Position
37:496074..505931
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENTGSGDAVDLPVKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgacgttgacaatgagcttctggactatgaagatgacgaggtggagaac
acagggagcggggatgctgtggacctgcctgtcaagaaggacgtaaagggctcctatgtg
tccatccacagctccggcttcagggacttcctgcttaaaccagagctgctgagagccatt
gtggactgcggcttcgagcacccctccgaggtacagcacgagtgtatcccgcaggccatc
ctgggtatggatgtgctgtgccaggccaagtctggaatggggaagaccgccgtgtttgtg
ctggccaccctgcagcagcttgaacccgttactggacaggtgtctgtgctcgtgatgtgt
cacacaagagagctggctttccagatcagcaaggagtatgagcgattctccaagtacatg
cccaccgtcaaggtggctgtgttctttggcggcctgtctatcaagaaggacgaggaagtg
ctgaagaagaactgcccccatgttgtggtggggaccccaggaaggatcctggctctggcg
cgcaacaagagcctcaacctgaaacacatcaaacacttcatcctggatgagtgtgataag
atgctggaacaactggacatgcgccgtgatgtccaggagattttccgcatgaccccccac
gagaagcaagtgatgatgttcagcgccaccctgagcaaggagatccggcccgtgtgccgc
aagtttatgcaagatcccatggagatctttgtggacgatgagacgaagctgaccctgcac
gggctgcaacagtactacgtgaagctgaaagacaacgagaagaaccgcaagctttttgac
ctgctggacgtgctcgagttcaaccaggtggtgatttttgtgaagtctgtgcagaggtgt
gtggcgttggcccagctgttggtggagcagaacttccctgccatcgccatccacagaggc
atgccccaggaggagaggcttgctcgctaccagcagttcaaggatttccagcgcaggatc
ctggtggccacaaacctgtttggtcgaggcatggacattgagagggtcaacatcgccttc
aactacgacatgcccgaggactcggacacctacctccaccgggtggcgagggcaggtcgg
ttcggtaccaagggcctggccatcaccttcgtgtcagacgagaatgatgccaaggtgctg
aacgacgtgcaggaccggtttgaggtgaacatcagcgagcttcccgacgagattgacatc
tcctcctacattgaacagacgcgataa
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