Polyodon spathula (Mississippi paddlefish): 121304411
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Entry
121304411 CDS
T07273
Name
(RefSeq) sodium channel protein type 10 subunit alpha-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121304411
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121304411
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GPHH
IQ
IQ_SCN5A_C
Adeno_E3_14_5
DUF2659
Motif
Other DBs
NCBI-GeneID:
121304411
NCBI-ProteinID:
XP_041091858
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Position
1:11651685..11674791
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AA seq
1218 aa
AA seq
DB search
MRSKKRISRLSPKEKFRLYGQHMSKGFSMESILSWTSDPSQLSTEEEEEGKPTSTKKWPL
FKQRFTEMFCSWTCCLPYLKVQQFMLKIVSHSMCELVITACIFTNTLILAIDHHGASYSE
DLDKGNTVLTVIFTVEAFLKIFALNPVPYLSNGWNAFDFIIVLLSFLDWGLTAANVKSFD
LSIMRSFRMLRVFKLAKSWKTLNVLITVIFGSLKEMGNLTLIVVIVIYIFAVIGMQLVGH
DYLNKEAFPDQQVPRWNFIYFYSSFLMVFRILCGEWVEPLYDCMRCSKMYFCIPLFFMTY
IAGNFLVLNLFLALLLNFFAGDIFTTDTSDSVAMKSKIQNFMSVVKMRNKQDPSAASVEP
SPQDSQLSGSSTTPNSKEDCVSDVKQKKKKCPPSSHEEIPTVSAQCRKYENGSAVMVLET
VEEVQVEPEIEQVHSVSRKSKEKSKKQPVEHTVTEEKKQNAEVEQLEVEQENSVMQPCVP
PLCCKLCSCCESWHIFTPLRHSVFKLVKHSVFEGIVLFIILVSTVTLTVDDKYTKKNPNI
QEVLRYLDHFYLAFFNLEMVLKITGLGVTGYFTNVWTLLDFFLVVIGWLGVLSSSIKSLR
SLRSFRTLRALRPLRAISRWEGMRLVVNALISSIPSISNVMLVCLVFWLIFGIIGVQIYG
GKFFQCVDSNGIRLPIDIVNNYSDCKANENKGYEWKNEAIHFDNIMAAYLALLQVSTFEG
WIEIMASAADARGIDLQPDTDANTYSLLYFVAFIVVGTFFTLNLFIGVIIDNFNTVHKRS
RKEGALVMLLTEDQRHLYGALKRVSKIRPTKMIPCPKNVVLLFFYKVVHHKYFEPLTIIL
IVLNMFLMTSEHYGQSDSFVQAQDMVSLVFTSLFTAEAVIKLLGLRLYYFTRPWNVFDIL
VVTVSIVGNLLEKAAENISFSPTILRVFRVARLGRLLRLVRSLKGIRRLLFTLIMSIPAL
FNIGVLLLLVMFIYSILGMTLFQDLPRSGSINEIVNFETFANSMLLLFRLTTAAGWNDVL
QQIMSSGTQPAFVCILYMSSYILVTFIVIVNMYVAVILENFTEAQEQELEGVTDDHIDMF
YEEWSNYDPSATEFISLEQLPDFLDSLKSPLRIPKPNAVKIAALNLPITSENKLHCLDIL
RGISCVIVGRVEETDPLRKLQMQITTRTLKRFPIRNNIQTSTTTLMIRKEVKAAMTIQRA
FRKWKMRRKLLTDHKRKD
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtaaaaagagaatcagcagactgagcccaaaagagaagtttcgtctgtacgga
cagcatatgtccaaaggtttttcaatggaatccattctatcatggacatctgatccttca
caattaagtacagaagaggaagaagaaggaaaaccaacgtcgactaaaaagtggcctttg
tttaaacagaggttcactgaaatgttttgttcgtggacttgctgcttaccttatctaaag
gtgcagcaattcatgttgaaaatcgtttcccattccatgtgtgagttggtcatcacagct
tgtatcttcaccaacacgctcatattagccattgatcaccatggagcctcttattcagag
gacctggacaagggcaacacggttctgaccgtgatttttactgtggaagcttttttgaaa
attttcgctctgaacccagtcccatacttgagcaatggctggaatgcatttgacttcatt
attgttttactgagcttcttggactggggactcactgcagctaatgttaaatccttcgat
ctgtccatcatgaggtctttcagaatgctcagagtcttcaaactggcaaaaagttggaaa
actcttaatgtcctcatcacagtgatttttgggtccctgaaggaaatgggcaacttaacc
ctgatagtggtcatcgtgatttacatatttgccgtgattgggatgcagcttgtaggccat
gactatttaaataaggaagccttcccggaccagcaagtcccccgatggaacttcatttat
ttctactcttcctttctgatggtgttccggattctctgtggagagtgggtggagcctctg
tacgactgtatgcgctgttccaaaatgtacttctgcatcccgctgttcttcatgacatac
atagcaggcaacttcctggtgttgaatcttttcttggctctccttcttaacttctttgcc
ggagatatcttcacaacagatacatcagattctgttgccatgaagtcaaaaatccaaaac
ttcatgtctgtggtgaaaatgcgaaataagcaagatccttctgctgcaagtgtcgaacct
agtccccaagacagccaactgtctggaagttcaacgaccccaaatagcaaggaagactgt
gtctctgatgttaaacagaagaaaaagaaatgccctccgtcatcacatgaagagatcccc
actgtcagtgcacagtgccgaaaatatgaaaatggatctgcagttatggtgctggagaca
gtggaggaagttcaagtagaacctgaaatagaacaggtccattcagtgagcaggaaaagt
aaagagaaaagtaaaaagcagcccgtggagcacacggtgacagaggagaaaaagcaaaat
gcagaagtggaacagctggaggtggagcaggagaacagcgtgatgcagccatgtgtacca
cccctctgctgcaagctgtgctcctgctgtgagtcatggcacatcttcacccctctaagg
cactcggtcttcaaactggtcaagcactctgtgtttgaagggatcgtcctgttcatcatt
ctcgtgagcacagtaacactgacagtggatgacaaatacaccaagaagaaccccaatatt
caggaagtgctgcgttacctggaccacttctacctggccttcttcaacttggaaatggtg
ctgaaaataacaggcctcggggtgaccggttacttcaccaatgtgtggacattgctggac
ttttttctggttgtgattggttggctgggtgtgctgagcagcagcatcaaatccctccga
tccctgagatccttccgaactcttcgcgctttgagacccttgagagccatttctcgttgg
gaaggaatgaggctggttgtaaatgccttgattagctcaataccctccatctcaaatgtc
atgctggtctgcttggtgttctggcttatatttggcattataggagttcagatctacggg
gggaaattcttccagtgtgtggacagtaatggaatcaggctgcctattgatattgtgaac
aactattcagattgcaaagcaaatgaaaacaagggctatgagtggaagaacgaagccatt
cactttgacaacatcatggccgcctatttggctctcttgcaagtatcaacatttgaaggc
tggattgaaattatggccagtgctgctgatgcaagagggatcgacctacagcctgacact
gatgcaaacacctacagtcttttgtattttgttgcctttattgttgtggggacatttttc
acactaaatttgttcattggcgtaattattgataacttcaatacagtgcataaaaggtcc
aggaaggaaggtgccttggtcatgcttttgacagaagatcagagacacttgtatggagcc
ttaaaacgggtttctaaaattagaccaaccaaaatgatcccttgtccaaaaaatgtcgtt
ttattatttttttacaaagtggtgcatcataaatacttcgaaccactgacgattattttg
atagttttaaacatgtttcttatgacaagtgagcattatgggcaatctgacagttttgtt
caagcccaggatatggtgagcctggtattcacgtctttgtttactgctgaagctgtcatc
aagctcctgggactgcgactgtattactttactcgcccctggaatgtctttgatatttta
gtggtcacagtatccattgtaggaaacttattggagaaggcagcagaaaacatctccttt
tcccccactattctgcgtgtgttcagagtggcacggctgggacggctgctgagacttgtg
aggtctctcaaaggaatacggaggttgctgttcacactgatcatgtccatccctgccctg
tttaacatcggcgtccttctcctcctggtcatgttcatttactccattctgggaatgaca
ttgtttcaagacctgcccagatcaggatccatcaatgaaattgtgaactttgaaaccttc
gcaaatagcatgttgctgttgtttagactaaccacggcagctggctggaatgatgttctc
cagcaaatcatgagtagtggcacccagccagcgtttgtgtgcattctgtacatgtcctcc
tacatattggtcactttcatcgtcatcgtcaacatgtatgtagctgttattctagaaaac
tttactgaagcccaggaacaagagctggaaggagtcacagatgaccacatcgacatgttt
tacgaggagtggagtaactatgacccgtctgccacagagtttatcagtttggaacagctg
ccagactttctcgatagtcttaagtctcctctgagaataccaaaaccaaacgcggtcaag
attgcagccttaaaccttcccataaccagcgagaacaagctgcactgcctagatatactg
agagggatcagctgtgtgatcgtgggcagagtggaagaaacagaccctttgaggaaactg
caaatgcaaataaccacaaggacactgaagaggttcccgatccgcaacaacatacaaacc
agcaccaccacgctgatgatacgcaaggaagtcaaggctgccatgacgatccagagagcg
ttccggaagtggaaaatgcgtcggaaactcctcacagaccacaagcgcaaggactag
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