Polyodon spathula (Mississippi paddlefish): 121304523
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Entry
121304523 CDS
T07273
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121304523
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121304523
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121304523
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121304523
NCBI-ProteinID:
XP_041091631
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All DBs
Position
38:1660601..1671730
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AA seq
427 aa
AA seq
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MAENDVENELLDYEEDEEPQAAPEATHAPGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKSCPHIVVGTPGRILALIR
NKNLILKNVKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRR
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgtagagaatgagctgctcgattacgaggaagacgaggaaccacag
gcagcccccgaggccactcatgctcctgggaagaaggaggtcaagggctcctacgtctcc
atccacagctccgggttcagggacttcctgctgaagccagagctgctccgagccattgtg
gactgcgggttcgagcacccctcagaagttcaacacgagtgtatcccgcaggccatcctg
ggcatggatatcctgtgccaggccaagtccggaatgggaaagacggccgtgtttgttctg
gccacactgcagcagatcgagccagtcgacggtcaggtctctgtgctggtgatgtgccac
acacgtgagctggcgtttcagatcagcaaggagtacgagcgcttctccaagtacatgccg
acggtgaaggcagccgtgttcttcggggggctctccatcaagaaggacgaggatgtgctc
aagaagagctgcccccacatcgtggtggggacccctggcaggatcctggccctcatccgc
aacaagaacctcatcctcaagaacgtgaagcacttcattctggacgagtgcgacaagatg
ctggagcagctcgacatgcgcagagacgtgcaggatatcttcagactgactcctcacgag
aagcagtgcatgatgttcagtgccaccctcagcaaagagatccgcccagtctgccgcagg
ttcatgcaggatcccatggaggtgtttgtggatgatgagacgaagctgacgctgcacggc
ctccagcagtactactgcaaactcaaggacagcgaaaagaaccgcaagctgttcgacctg
ctcgacgtgctggagttcaaccaggttgtgatctttgtgaagtctgtgcagcgctgtgtc
gctctctcgcagctcctggtggagcagaacttccctgccatcgcgatccacagaggcatg
gctcaggaggaacggctctctcggtatcagcagttcaaagatttccagaggcgcatcctg
gtggccaccaatctgtttgggcgtggcatggacatcgagagagtgaacatcgtcttcaac
tacgacatgcctgaggactcggacacatacctgcacagggttgccagagcgggtcggttt
ggcacgaagggtctggctgtaacctttgtgtcggacgagactgatgctaaaatcctgaac
gacgtgcaggaccgcttcgaggtgaacgtggccgagctgcctgaggaaatagatatctcc
acctacattgaacagagtcgatga
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