Polyodon spathula (Mississippi paddlefish): 121304542
Help
Entry
121304542 CDS
T07273
Name
(RefSeq) zgc:136908
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121304542
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121304542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121304542
03009 Ribosome biogenesis [BR:
pspa03009
]
121304542
04131 Membrane trafficking [BR:
pspa04131
]
121304542
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121304542
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121304542
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121304542
Membrane trafficking [BR:
pspa04131
]
SNARE
SNARE associated proteins
Others
121304542
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121304542
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121304542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_33
AAA_2
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_14
AAA_28
nSTAND3
Vps4_C
Mg_chelatase
Parvo_NS1
AAA_17
ATPase_2
ATPase
IstB_IS21
AAA_18
AAA_7
ABC_tran
AAA_24
ResIII
DUF815
NACHT
TsaE
Viral_helicase1
SLFN-g3_helicase
NB-ARC
bpMoxR
KAP_NTPase
Zot
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
121304542
NCBI-ProteinID:
XP_041091657
LinkDB
All DBs
Position
38:complement(3405416..3426826)
Genome browser
AA seq
807 aa
AA seq
DB search
MPATGGDSKGEDYSTAILKQTKRPNRLVVDEALNEDNSIICLSQSKTDDLQLFRGDTVLL
KGKKRRQTVCIVLTDETCADERVRMNRVTRSNLRVRLGDVVSIQACPDVKYGKRIHVLPI
DDTIEGLSGNLFEAFLKPYFLEAYRPVHKGDIFLVRGGLRAVEFKVVETDPTPYCIVAPD
TIIHCEGQPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR
GLLLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA
IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRTHVVVMAATNRPNSVDPALRR
FGRFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVDLERAAMETHGHVGADLAALCSEAA
LQAIRKKLIVIDLEDETIDADVLNSLAVTMDDFQWALGQSNPSALRETNVEVPQVNWEDI
GGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIAHECQANF
VSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGSAGDGGGAADR
VINQILTEMDGMTNKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDERSRVAILRA
NLRKSPIARDVDQNYLAKITEGFSGADLTEICQRACKLAIREAIEVEIRLERERQSHPET
AMEEDSDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFSQTLQQSRGFGTFRFPSRTQS
GSGESSGQGDSGRGNLYRDEGDEDLYQ
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgacagggggagactcgaagggggaggattactccaccgctatcctgaaacag
acgaagcgcccaaaccgtcttgttgtggatgaggctcttaatgaagacaacagcatcatc
tgcctgtcccagagtaagacagatgatttgcagcttttccgcggggacacggtgctcctg
aaaggaaagaagcggcggcagactgtttgtatcgtcctcaccgacgagacctgcgcagac
gagagggtgcgaatgaaccgcgtcacacgcagcaacctgcgtgtgcggcttggcgacgtc
gtcagtatccaggcctgtcctgatgtgaagtatgggaagcggattcacgtgttgcccatc
gacgacaccatagagggactgtctgggaatctctttgaagcgttcttgaagccctacttc
ctggaggcataccgtcccgtacacaaaggtgatattttcctggttcgtggggggttgagg
gcggtggagttcaaagtggtagagactgaccccaccccttactgtatcgtcgccccggat
accatcatccactgcgagggacagccaatcaagcgagaggatgaagaggagagtctgaat
gatatcggctatgatgacatcgggggctgcaggaagcagctggctcagattaaggagatg
gtggaacttcctctccgccacccagcgctattcaaagccattggagtcaagccccctcga
gggctcttgctgtacggcccacctgggacaggtaaaacccttgtggctcgagctgtagcc
aatgagacgggagcattctttttccttattaacgggccggaaatcatgagcaaacttgca
ggggagtcggagagtaatctaagaaaggcatttgaggaagcagagaaaaacgcaccagcc
attatcttcatcgacgagttagacgccatcgctccaaagagggagaagactcatggagag
gtggaacgcagaatcgtctcccagctgctcacgctgatggacgggctcaagcagcgtact
cacgttgttgtcatggcagcgaccaacaggcccaacagtgtggacccagccctgcgccgg
ttcggccgatttgaccgggagattgacattgggatcccggattccactggcaggctggag
atcctgcaaatacacaccaagaacatgaagctgtcggaggatgtggacctggaaagggct
gccatggagacccatggtcatgtaggagctgacctggctgccctgtgctcggaggctgct
ctccaggccatccggaagaagctgattgtcattgacctggaggacgagaccatcgacgca
gacgtgctgaactcgctggccgtcaccatggatgacttccagtgggcactggggcagagc
aatccttcagctctgcgggagacgaatgtggaggtaccgcaggttaactgggaggatatc
gggggtctggacgaggtgaagagagagctacaggaactggtgcagtaccctgtggagtac
cctgacaagtttctgaagttcgggatgaccccctctcggggggtgttgttctacggaccc
ccaggctgtgggaagaccctcctggccaaagccatcgcccacgagtgccaggccaacttc
gtgtccatcaaggggccggagctgctaaccatgtggttcggggagtccgaggccaacgtg
cgcgacgtcttcgacaaggccaggcaggcagccccctgcatcctattctttgacgagttg
gactctattgccaagtcaagggggggcagtgcgggggatgggggaggggctgcggaccgt
gtcatcaaccagatcctcacggagatggacggcatgaccaacaagaagaacgtcttcatc
atcggagccacaaacaggccagatatcattgactctgcaatcctgcggcctggcagactg
gaccagctcatctacatccccctgccggacgagcgctcgagagtggccatcctgagagct
aacctgcgcaaatcacccatcgcccgggacgttgatcagaattacctggctaagatcaca
gagggcttctccggggcggacctgactgagatctgtcagcgcgcatgcaagctggccatc
cgagaagctatcgaggtggagatcagattggagagggagagacagagtcatccagagaca
gccatggaagaggactcggacccagtccctgagatcaggaaggatcactttgaggaggcc
atgagattcgcgcgccgctccgtcagcgacaacgacatccgcaagtacgagatgttctct
cagaccctgcagcagagccggggcttcgggaccttcagattcccctctaggacccagtct
ggcagtggagagagttcaggacagggagacagtggccggggaaacctctacagagacgag
ggagatgaggacctgtaccagtga
DBGET
integrated database retrieval system
