Polyodon spathula (Mississippi paddlefish): 121304544
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Entry
121304544 CDS
T07273
Symbol
farsa
Name
(RefSeq) phenylalanine--tRNA ligase alpha subunit isoform X1
KO
K01889
phenylalanyl-tRNA synthetase alpha chain [EC:
6.1.1.20
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
121304544 (farsa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pspa01007
]
121304544 (farsa)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121304544 (farsa)
Enzymes [BR:
pspa01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
121304544 (farsa)
Amino acid related enzymes [BR:
pspa01007
]
Aminoacyl-tRNA synthetase
Class II (U)
121304544 (farsa)
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
121304544 (farsa)
Prokaryotic type
121304544 (farsa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2d
PheRS_DBD1
PheRS_DBD3
PheRS_DBD2
tRNA-synt_2
tRNA_synthFbeta
MarR_2
ARM_FBXO47
tRNA-synt_2b
DUF1204
Motif
Other DBs
NCBI-GeneID:
121304544
NCBI-ProteinID:
XP_041091658
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All DBs
Position
38:3134260..3152999
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AA seq
497 aa
AA seq
DB search
MADSGVAEALLQRLDRADGGVDSQQVAASLGLDHQLVVGAVKSLQALGEVICAELRSSKH
WEVTEEGKEIAEQGSHEARVFNCIPAEGMAQSQLMKLPSAKVGFSKAMSSKWVRLDKNAE
GGPRIYKSVDSIEDTVKDRLQLVQRGQAGSLEEKEKNELKKRKLLSEVTVKSYWITKGSS
FSTTVTKQETELTPEMLASGGWRDKKFKPYNFDALGIIPDCGHLHPLMKVRTQFRQIFLE
MGFTEMPTNNFIESSFWNFDALFQPQQHPARDQHDTFFLSDPAIATEFPLDYLERVKKVH
SEGGYGSQGYKYDWKIEEAQKNILRTHTTAVSARMLYRLAQQKEFSPVKYFSIDRVFRNE
TLDATHLAEFHQVEGVVADYGLTLGDLMGILHQFFIKLGITKLRFKPAFNPYTEPSMEVF
SFHEGLKKWVEVGNSGVFRPEMLLPMGLPEGVSVIAWGLSLERPTMIKYGINNIRELVGH
KVNLQMVYDSPVCRLDA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcggcgtagcggaggctcttctccagcggctcgatcgggcggatggcggg
gttgacagccagcaggtggcggcgagtctcgggctggatcatcagctggtggtcggagcc
gtgaagagcttgcaggcgctcggggaggtgatctgtgccgagctccgctcttcaaagcac
tgggaggtcacggaggaggggaaggagatcgcggagcagggcagccatgaggctcgggtc
ttcaactgcatcccggcagagggcatggctcagagccagcttatgaagctgccgagtgcg
aaggtgggcttcagcaaggccatgtctagcaagtgggtcagactggacaagaacgcagag
ggaggacctcggatctacaagagcgtggacagtattgaggatactgtgaaggacaggctg
cagctcgtccagcgtggacaggcagggagcctggaggagaaggagaagaacgaactgaag
aagaggaagctgctgtccgaggtgacagtaaagtcttactggatcactaaaggaagcagt
ttcagcaccacagtcactaagcaggagacagaactgacacccgagatgctagccagcggt
gggtggcgtgacaagaaattcaagccgtacaactttgacgccctgggcatcatccctgac
tgcgggcacctgcacccgctcatgaaggtgcgcacgcagttcagacagatcttcctggag
atgggcttcacagagatgccaaccaataacttcatcgagagctcgttctggaacttcgat
gccctgttccagccccagcagcaccctgcccgggaccagcacgataccttcttcctgtct
gacccggcaatcgccaccgagttccccctggactatctggagcgagtgaagaaagtacac
tcagagggggggtacggctcccaggggtacaagtacgactggaagatcgaagaggcccag
aaaaacattctgaggacccacaccactgccgtcagcgcacgcatgctgtaccgcctcgct
cagcagaaggagttctccccggtgaagtatttctccatcgaccgcgtgttccgcaacgag
acgctggacgccactcacctggcagagtttcaccaggtggagggcgtggtggcagactac
gggctcacgctgggggacctgatgggtatcctgcaccaattcttcatcaagctgggaatc
acgaagctccgcttcaagcccgcgttcaacccttacacggagcccagcatggaggtgttc
agcttccacgaaggtctgaagaagtgggtggaggtggggaactcgggggtcttccgaccg
gagatgctgctgccgatggggctccctgagggggtttcagtcatcgcctggggactgtcg
ctggagagacccactatgatcaaatatggaatcaacaacatccgagagctggtgggtcac
aaagtgaacctgcaaatggtctacgacagccctgtgtgccgactggatgcctaa
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