Polyodon spathula (Mississippi paddlefish): 121304827
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Entry
121304827 CDS
T07273
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1-like
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121304827
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121304827
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
SALM family
121304827
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
121304827
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
Ig_2
ig
fn3
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
121304827
NCBI-ProteinID:
XP_041092169
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Position
40:1059166..1111982
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AA seq
762 aa
AA seq
DB search
MDRLVFCVLMIGVLVKAHNCPGRCICQNISPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITVIRRKDFLNMTSLVHLTLSRNTISQIMPHAFVDLRALRALHMDGNRLNSLKHEHFK
GLGNLRHLILGNNQIHHVASATFDEFLGTIEDLDISYNNLETLPWEAIARMTNINTLTLD
HNLIDHIEEGTFSMLHKLVRLDMTSNRLHKLPPDTLFLRAQVLANAKASNPSTLTVSFGG
NPLHCNCELLWLRRLTREDDLETCASPDTLMDKYFWSIQEEEFICEPPLITRHHASKAYV
MEGQGVTLKCKAVGDPDPSIHWISPEGKLIQNTSRTVLFDNGTLDIFITTLKDSGSFSCI
ASNAAGEATAPVEVNIVPLPLFINNTSHMKEPDPGLSDITTSSKSSSNDTKNQDKKVVVG
ELTSSSVVIRWPSERHIPGIRMYQIQYNSTSDDTLVYRMIPSTSKTFLVNDLAAGRDYDL
CVLAVYDDGITSLTATRVVGCVQFSTASENSQCKFIHSQFLGGTMIIIIGGIIVASVLVF
IIVLMIRYKVYNNQDDHTSAKVSNVCSQTSGNLAALHRSSSKQAEEKNEIRAKEAANKDC
KAVVLKVDCNKPEASQPTTTIITEVQLPQVPIDERQTQTSIDLQQAAAILSSEEVHTDSS
VAGSTMSLCLIGSSKGNKEAPKLSDKKSALVNIALLPSDIARTRHRFSFDGDYSLFQSNS
YPRRARTRRHMSSTQLNMDMASPFGNQRVISSSTEWMLESTV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggacaggcttgtcttctgtgtgctgatgattggcgtgttggtgaaggctcataactgc
cctggtcgctgcatctgccagaacatctctcctaccctgactttgctctgtgccaaaacg
ggactcctgtttgtgccgcccaccatcgaccgcaaaaccgtggagctccgcctgacggac
aacttcatcaccgttatccggaggaaggactttctcaacatgaccagcctggttcatctc
actctgtctaggaacaccatcagccagatcatgcctcatgcttttgtggacttgagagcc
ctccgcgcattgcacatggatggtaaccggctcaactccctgaagcacgagcacttcaag
ggtctcggcaaccttcgtcacctcattttgggtaacaaccagatccaccatgtggcttct
gccacgtttgatgagtttcttggcaccattgaagacttggatatctcgtacaacaaccta
gagaccctcccttgggaggctattgccaggatgaccaacatcaacaccctcacgttggac
cacaatctgatagatcatattgaagaagggaccttctctatgcttcacaagctggtcagg
cttgacatgacttcgaaccggctgcacaagctgccgccagacaccctgttcctacgcgct
caagtcttggccaatgccaaggcatccaacccttccacattgacagtcagctttggaggg
aaccccttacactgtaactgcgagctactctggctcaggaggcttaccagggaagatgac
ttggagacatgtgcttcccctgacaccctaatggataaatacttctggtccatccaagag
gaggagttcatctgtgagccacctctgatcaccagacaccatgcctctaaagcctatgtc
atggaagggcaaggggtgaccttgaagtgcaaagccgttggtgatccagacccttccatc
cattggatctctcctgaggggaagctcattcaaaacacctccaggaccgtcctctttgac
aacggaacattggacattttcatcaccacccttaaggacagcggatctttcagctgcatc
gcctccaacgctgccggggaagcgactgcccccgtcgaggtcaacatcgttcccctgccc
cttttcatcaacaacaccagccacatgaaggagcccgatcctggcttgtctgacatcacc
acctcgtccaaatcgagctccaatgacaccaagaaccaagacaagaaggtggtggtcgga
gagctgacctcatcctctgttgtcatcaggtggccttctgagcgtcacatccctggcatc
cgcatgtatcagatccaatacaacagcacctctgatgacacactggtttacaggatgatt
ccatcaactagcaagaccttcctagtgaatgacttagcagcaggtcgagactatgacctt
tgtgtcctagctgtctacgacgatggcatcacctctctgacggccaccagagtggtgggc
tgtgtccagttctccactgctagtgagaacagccagtgcaagttcatccacagtcagttc
cttggaggaaccatgatcatcatcattggaggcatcatagtggcttctgtcctggtcttc
atcatcgttctgatgatccgttacaaggtgtacaacaaccaagatgaccacacctcagcc
aaagtgagcaacgtctgctcccagaccagcggcaacctagccgccctgcatcgttcctcc
tctaagcaagcggaggagaagaacgagatccgggccaaggaagctgccaacaaagactgc
aaggctgtggtcttgaaagtagactgtaataaaccagaggcttcccagcccaccaccact
atcatcactgaggtccagttgcctcaggtccccatagatgagaggcagacacagaccagc
atagacctacagcaagcagcagctatcctatcttcagaggaggtccatacagacagcagt
gtagcgggttccaccatgtcactctgcttgataggttcctccaaaggcaacaaagaggct
cccaagcttagcgataaaaagagtgccctggttaatattgccctccttcccagcgacatt
gcaagaactcggcacaggttctccttcgatggggactactctttgtttcagagtaacagt
taccccagaagggcaaggacaagaagacacatgtcctctacccagctaaacatggacatg
gcttctccttttgggaaccagagggtgatctctagcagcacagagtggatgttggaaagc
acggtttga
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