Polyodon spathula (Mississippi paddlefish): 121304832
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Entry
121304832 CDS
T07273
Name
(RefSeq) latent-transforming growth factor beta-binding protein 4
KO
K08023
latent transforming growth factor beta binding protein 2/3/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121304832
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
121304832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
EGF
TB
hEGF
EGF_3
FXa_inhibition
Plasmod_Pvs28
EGF_Teneurin
EGF_2
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
121304832
NCBI-ProteinID:
XP_041092175
LinkDB
All DBs
Position
40:complement(1620854..1682580)
Genome browser
AA seq
1839 aa
AA seq
DB search
MLIRLSPFSVLVTFLLIFHLSQCVDLKAANNATGETNEQNRREVGKALPKQESVSLATQL
SGAPKESVAKTRQKTNTPKIRALGKAGKVAINSTEKAKTLTGPHVCGSRCCSGWRLAPKT
KKCTKPQCAPRCLNGGLCKRPHMCVCKTGFEGSRCETTSTSQGLSTPSPSSNTSSPGAVR
AGRVHSEPRRGPETQSQTPEKHGTVRWHPLTLKEAQSVLLKKSSGSDGLPEKMTALLSKH
VEAQRGKLLSAGLLVVKESSVKIIHTSQGEYTVYRSPVPARNQNPAGERIKVLFTPTICK
VRCIRGHCTNHCERGNVTTVYSSERGHSPPGAGFRVFLCPLLCQNGGICMQKDRCLCPPN
FTGKFCHVPVSSSANEIEGAAQNRAASSNQRGLTQSVYTLPLHNHQSQQSGGSEVVKVHV
QHPLEASVNIHQVQRVREGPAQGQGQGDASADRRVPLPRIQAQTIRGDSSYFESSGFGYC
FQEVRNGQCSSPLPGLRTQEICCRGQGKAWGISECALCTSNQGSDVAVDGGCLKGFERIN
GTQCVDVNECSLPGFCQNGECINTRGSYSCVCKTGYILDASQGRCISQMVISELKGQCYR
ILKTGFCSMPILRNITKQICCCSRVGKAWGQACERCPPFGSEQFKEICPAGPGYHYSASS
VKINQERQTAVAPPRAQTPSLTANVGNEREERLPPRMERPVQPLKPEPPVQPLRPVQTFT
VSTTTRTAMRAPEVRVCDLNPQICGAGRCLKQRGGTYTCLCNQGYHINPQQTRCVDVDEC
SLSPRPCTNGQCENTAGSYRCLCPSGFRLGPQGASCTDTDECRQSPSPCTNARCENTPGS
YRCVCAAGYQLDHQGAECIDINECENAATCPDQECVNSAGSFQCVPCRPGYQLKNGRCTD
VDECSLSPRPCTNGQCENTAGSYRCLCPSGFRLGPQGASCTDIDECRLTPRPCSVGHCEN
TAGSYRCVCPNGYRLNPQATQCIDTDECRQSPSPCTNARCENTPGSYRCVCAAGYQLDHQ
GAECTDINECENAATCPGQECVNSAGSFQCVPCRPGYQLKNGRCTDVDECLGSLVCGTNG
HCVNTDGSFSCDCKIGFRSDSSRNQCSDINECLEGDFCFPHGECLNTDGSYSCLCSEGYN
ATPDGDSCIDVDECARPELCQDGSCTNTQGSFECVCQPGFATNPEKTACLDVDECAESRG
AVCGPRRCENTIGSFHCITSCEPGHRATVSGDCVDINECANDTVCGDHAFCQNLIGSYQC
LCDQGYEAGRNGQSCVGTGNTVGSYWTNSCNGTNNPCKVRQDPLFLLKGRSNSQRFPSSS
GGVYRPDPSPPRSDVRECYYNIRDANVCQNVLTRNATLQECCCTVGEGWGESCQLTACPA
PGTAQYQSVCPSGKGYVTSTRGSFSYKDIDECTLFTAAVCKNGVCVNTIPGYSCYCPNGY
YYDQTQLECVDNDECLEEESCLGGSCVNTMGSYYCSCDPPLILDAAQRACVANISQSADE
NLAYCWQELGEDYICNRPMLDRQITYTECCCLYGLAWGIECALCPARDSDDYEALCNVLR
PPAYGPPLGPYAGEYGPGFGGNYEPPYGPDIFADPPPRGRTPGYLRPGGYEDYPSRGGQM
PSYGSRSRSPASYGPQEGPYGRHGPGRSYDLGDFEPDLPYVPHESEPRPPFGRADSLVEP
SYESRQGRYRSLSPQSAGPPFETEEPSVPWLQYRPRESAPYPEYRDRPLGGIRRETYESR
YEPYEGLSAEECGILHGCENGRCIRVPEGYTCDCYDGYHLDMTTMTCIDINECDEADDPS
TLCVNGQCLNTDGSYQCVCLRGFVMSRQRNYCIPARPRQ
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcagactctcacctttttccgttttggtcacctttctgcttatttttcacctg
tcccaatgtgtggatttaaaagctgcgaataatgcaacgggagaaaccaacgagcagaat
cgccgggaagtaggcaaagctttgcccaagcaagagagcgtttctttggctacacagctg
tctggcgctccgaaagagagcgttgccaaaactaggcagaagaccaataccccaaagatc
agagcgcttggaaaagcgggcaaagttgcaataaattcaactgaaaaagccaagacatta
accggcccccatgtgtgtggctctagatgttgttctggatggcgcctggctcccaagacc
aagaaatgcaccaaacctcagtgtgcccccaggtgtctgaatgggggactgtgtaaaagg
ccccacatgtgtgtctgcaagaccggcttcgagggatccaggtgcgagacaaccagcacc
tcccagggactgtcgaccccaagccccagctccaacacttcatccccgggggctgtccgg
gcaggcagggtgcactcggagcccaggaggggccccgagacacagtctcagacccccgag
aaacatggcacagtgcgctggcatcctttgacgctgaaggaggctcagtctgtgcttctg
aagaagtcgtcggggtcagatggcctgcctgagaagatgaccgccctgctgtctaagcac
gtggaggcccagcgtggcaagctgctgtccgcggggctgctggtggtcaaggagtcaagc
gtgaagatcatccacacctcgcagggggagtacaccgtctaccggagcccagtgccagct
aggaatcaaaaccctgcgggcgaacgcattaaggtgctgttcactccaaccatctgcaag
gtgcgttgcatcaggggtcactgtaccaaccactgcgagagaggcaatgtcaccaccgtc
tacagctctgagagggggcattcaccaccaggggctggcttcagagtcttcttatgcccg
ctgctgtgtcagaacggtggaatttgtatgcagaaggaccgctgtctctgcccaccgaac
tttactgggaaattctgccacgtcccggtctcctcctcagccaatgagatagagggggcg
gcccagaacagagcagcatcatccaatcagcgggggctgacacagtctgtgtacaccctc
ccactgcacaaccaccaatcacagcaaagtggaggctcggaggtggtgaaggtgcatgtg
cagcaccccctagaggccagcgtgaatatacaccaggtgcagcgtgtgagagagggacca
gcgcaggggcaggggcagggcgatgccagcgcagacaggagggtgccgctgcccaggatc
caggctcagaccatccgcggagactccagctacttcgagtcatctggattcggatactgc
ttccaagaagtccggaacggccagtgcagctcccctctgcccggactgaggactcaggag
atctgctgccggggtcaggggaaggcctggggcatcagcgagtgtgccctgtgtacatcc
aaccaggggagcgatgttgctgtggatggaggctgtctgaagggtttcgagaggattaat
gggacacagtgtgtggatgttaacgagtgctcgctgcccgggttctgtcagaacggggaa
tgcatcaacacacggggaagctacagctgtgtctgcaagacaggctacatactggatgct
tctcaaggacgctgcatttcccagatggtgatctcggagttgaaggggcagtgttatcgc
atcctgaagacggggttctgctcgatgcccatcctaaggaacatcaccaagcagatctgc
tgctgcagcagagtgggcaaagcctggggtcaggcctgcgagaggtgcccacccttcgga
tcagagcaatttaaggagatttgcccagcagggccaggttaccactactcagcttccagt
gttaaaatcaaccaggaacgccaaactgcagtggcgccccctagagcccaaacaccctct
ctgaccgccaatgtgggcaacgagagagaagagaggctgccaccaaggatggagaggcca
gtgcaaccactgaaaccagaacccccagtacaaccacttagaccagtacagacattcacc
gtctccaccacaacccgcactgccatgcgtgccccagaggttcgagtatgtgacctgaac
cctcagatctgtggagcggggcgctgtctgaagcaaagaggaggaacctacacctgtctc
tgcaaccagggctaccacatcaacccccagcagacacgatgcgtggatgtagacgagtgc
agtctgagcccgcggccctgcacgaacggtcagtgtgagaatacagctgggagttaccga
tgcctgtgtccgtctgggtttagactgggaccgcaaggagccagctgcacagatacagac
gagtgccgacagtcccccagcccctgcactaacgcacgctgtgagaacacacctggcagc
tacaggtgtgtctgcgctgctggataccagctggatcaccagggagctgagtgcatagat
atcaatgagtgtgagaatgctgcaacctgccctgatcaggaatgtgttaactccgctggc
tccttccagtgtgtgccctgccggcctggttaccagctaaagaacggcagatgcacagat
gtggatgagtgcagtctgagcccaaggccctgtacgaacggtcagtgtgagaatacagct
gggagttaccgatgcctgtgtccgtctgggtttagactggggccgcaaggagccagctgc
acagatatcgacgaatgccgcctgacgcctcggccttgctccgttggtcattgtgagaac
acagcgggcagctatagatgtgtttgtcccaatggctacagactgaacccacaggcaacc
cagtgcattgatacagacgagtgccgacagtcccccagcccctgcactaacgcacgctgt
gagaacacacctggcagctacaggtgtgtctgcgctgctggataccagctggatcaccag
ggagctgagtgcacagatatcaatgagtgtgagaatgctgcaacctgccctggtcaggaa
tgtgttaactccgctggctccttccagtgtgtgccctgccggcctggttaccagctaaag
aacggcagatgcacagacgtcgatgagtgtctgggctcgttagtctgtggtactaatggg
cactgtgtgaacacagatggctccttcagctgtgactgcaagattggattcaggtcggac
agcagtcggaaccagtgcagcgatatcaatgagtgtctggaaggggacttctgtttcccg
cacggcgaatgtctcaacactgatgggtcgtacagctgtctgtgttccgagggatacaat
gccaccccagacggagactcctgtatagatgtggatgagtgtgccaggccggagctgtgc
caggatggcagttgtaccaatacccagggctccttcgagtgtgtgtgccaacccggcttt
gccaccaacccagaaaagactgcctgccttgacgttgatgagtgtgcagagtcgagggga
gctgtgtgtggaccccgacgttgtgagaacaccatcggttccttccattgcatcacttcc
tgtgagcccggccacagggcaactgtcagcggggactgtgtggacattaacgagtgtgca
aacgacactgtctgcggtgaccatgccttctgccagaacctgattggctcttaccagtgt
ctgtgtgaccagggttatgaggcggggcgaaatgggcagagctgtgtgggtacgggaaac
accgttggttcttattggacgaacagctgcaacggcactaacaacccatgcaaagtcaga
caagatccattgtttctcttaaaggggaggtcaaactcccagaggtttcccagcagttct
gggggagtgtatcgaccagacccctcccctccgcgcagtgatgtcagagaatgctactac
aacatccgtgacgcaaacgtgtgccaaaacgtactgacacgcaacgccaccctacaggag
tgctgctgcaccgtgggggagggctggggggagagctgtcagctgactgcctgcccggca
cctggaacagctcaataccagtctgtgtgtcccagtggaaagggatatgtgacctctact
cggggctccttcagttacaaagatattgatgagtgcacactgttcactgctgcagtgtgt
aagaatggcgtgtgtgtgaacacgatcccaggctattcctgctactgtcccaatggctac
tactatgaccaaacacaactggagtgcgtggataacgatgagtgcttggaggaggagtcc
tgtctgggagggagctgtgtcaacactatgggctcgtattattgctcctgtgacccccct
ctcatcctggacgcagcccagcgagcgtgcgtcgccaacatcagccagtctgctgatgaa
aacctggcgtactgctggcaggagttaggagaagattatatctgtaaccggcccatgttg
gataggcagatcacttacacagagtgctgttgcctgtatggactggcctggggtatagag
tgtgcactctgcccagctcgagactcagatgattacgaagccctgtgcaatgtcttgaga
cccccggcttacggaccccctctcggaccctacgctggggaatatggaccaggctttgga
gggaactacgagcctccatacggtccagacatcttcgctgatccccctccacgaggcaga
accccaggctatctcagacctggggggtatgaagactacccctcccgcgggggacagatg
ccaagctatgggtcccgttctcgctctccggcttcatacggaccacaggagggcccgtac
ggacgccacggccctggccggagctacgatctgggggatttcgagcctgacctgccatat
gtaccccacgaatcagagcccagaccaccctttggcagagcggactctctggtagaaccc
tcttatgaatcccgtcaagggaggtacagatccctgagcccccagtctgcaggaccccct
tttgaaacagaagagccctctgtcccgtggctgcagtacagaccaagagagtcagctccc
tacccagagtaccgtgaccggccactggggggcatcaggagagagacctatgagagcaga
tatgagccgtacgagggcctgagcgcggaggagtgtgggatactgcacggctgtgagaat
ggccgctgcatccgcgtgccggagggctatacctgtgactgctatgatggttaccacctg
gacatgactacgatgacctgcatagatataaatgagtgtgacgaagcagacgacccctcc
accctgtgtgtgaacggacagtgtctcaacacagacggctcctatcagtgtgtgtgcctc
cgtggctttgtgatgtcaagacaacgcaattactgcatcccggcacgaccacggcagtga
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