Polyodon spathula (Mississippi paddlefish): 121304841
Help
Entry
121304841 CDS
T07273
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121304841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121304841
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
121304841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
Cnd1
HEAT
Cnd3
EAD7
Motif
Other DBs
NCBI-GeneID:
121304841
NCBI-ProteinID:
XP_041092188
LinkDB
All DBs
Position
2:98332097..98397799
Genome browser
AA seq
2811 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHSLNQVSTDHIELKDNLGSDDPEGDIPVLLQTVLTRNPNVFREKSMQNRYGVQG
GIMQQPMMPQYKMSQNSMHGSPASSTYQQTTISHSPSSRFVPPQTTSGNRFMPQQNSPVP
SPYTPQSPPGYMQYPHPPSYTQHQQIQQELHGSPLVSAPTYSGSPQRPVQPCLIVQTQPS
PQQNPSTPALVSVASPMVAGSMRNIHENKVSGQVSSNSANHHADNSRHGSNEDYLHMVHR
LGNEEADPSMRNASFTLRSPQSACSPAGSDGTPKAGSRPPLILQSPPPYASPRDGPPDIL
LDSPDRKKKQKKMKMSKEEKEQADKAAMYDIISSPSKDSTKLTLRLSRVKSSEMDPQEDL
LPGMEIGTDPEGDLAYNNMPCMGQPPKPPVAPQDLHRSLNVAAQCLSQNEQAAFLQAQQV
PVLQQNSSVVSAKQPQPPILQPQGAPPQQGATQPLSVTPYDEVEMDALAEIERIERESAI
ERERCSKEVQDKDKPLKKRKQDSYPQEPGAGGTAGATGASVGGGCSAGNKAAPQEASAAG
NGSSRPALMVSIDLQQAGRTDSQGLPDPTLPDPTLPVPLDEGQKQTEDPRGLSIAIAAVA
APGEGSISTRQEDTAGVLKPKPENRPETPRRKSDGEVQKASDGRPEVIKHRPETPKQKGG
ESKPETPKHKGEIRPETPKQKGEGRPETPKHRHDNRRDSSAKPPSSEKRPEVSKHRHDGK
TDSIKVETGGRGSETPRQRPDGRPASSSTSENPRRDQDGHKQRSEDRGDAERHRGDPSRI
RRPDTPKSSSRGEYDSKHGVKSAGSRDRERERDREKKHRPESGESRERPDSPRVKQEPRG
DSSSKSRLDRPGFKSPSSKEDRRSDGSKNRPDGHKQQQQQPDSKPDFPSYLLGGKSGALK
NFVIPKIKRDKDGNITQDLKRTQSREENKVKIEKMSLVEDLNKGSKPVVVLQKLTFDEVQ
KFIKEKEDRNARSSSKSGKNTPSLKSGKGGIDQSVLKDLPPELLAEIESTMPLCERVKMN
KRKRATVNEKPKYAEVSSDDDSNSEEAFESARKKHKKDRDKAWESEEVRERRGSGDHRKS
SHSHEGRRSSGSRYRERSPEDSESDTPPPSLSDIAKRLKKKEKQKKRKAYEPKLTPEEMM
DSSTFKRFSASVDNILENLEDMDFTALADDDEIPQELLLGKHQLHELGSESAKIKAMGIT
CRLPSEKLVKVLNILEKNIQDGAKLSTLINHDNDTEEEERLWRDLIMERVTKSADACLTA
LNIMTSTHMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVDHGGGLLSSRAKRAKC
STHKQRAIVMLYNKVCDIVSNMSELLEIQLLTDTTILQVSSMGITPFFVEGVSELQLCAI
KLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDTDGEPMYIQMVTALVL
QLIQCVVHLPSDKDSNADDEYGKKVDQDVLITNSYETAMRTAQNFLSVFLKKCGSKQGEE
DYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLGTV
AARLRKDAVTSKMDQSTIDRILKESPGTDEIQQLQKALLDYLDINAETDPSLAFSRKFYI
AQWFRDTTTETEKAMRSQNQKDEDSSEGPHHARDIETTGDIMQKAEARKKCLRSIIKTTP
SKFSTLKMNSDSVDYEDSCLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKC
LSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIE
RILDTGISVRKRVIKILRDICLEQPTFSKVTEMCVKMIRRVNDEEGIKKLVNETFQKLWF
TPTPSHDKDAMTRKILNITDVVAACKDTGYDWFEQLLQNLLKSEEDASYKPAKKACVQLV
DNLVEHILKYEESLADSENKGVNSNRLVACITTLYLFSKIRAQLMVKHAMTMQPYLTTKC
NTQSDFLVICNVAKILELVVPLMEHPSETFLATIEEDLMKLIIKYGMTVVQHCVSCLGAV
VNKVTHNYKFVWACFNRYYGAITKLKTQNQEDPNSTILAANKPALLRSLFTVGALCRHFD
FDQEEFKGNTKVVIKEKVLELLLYFTRHADEEVQTKAIIGLGFSFIQHPSLMFEQDVKTL
YNGILSDKNGSVNLKIQVLKNLQTYLQEEDTRMQAADREWKKLSKQEDLKEMGDISSGMS
SSIMQLYLKQVLEAFFHTQSNVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPEPTMR
NKSDQQLIEIDKKYTGFIHMKAVAGIKMSYQVQQAIWAAHNTIIRGFRQDEQNTALCSHL
FTMVRGNRQHRRAFLISLLNLFDDSAKTDVNMLLYIADNLACFPFQTQEEPLFVMHHIDI
TLSVSGSNLLQSFKESLLKEAKPKEQKYCSEEEEEDEEQTSDSEDEAVRRPRKTCQRVDS
DSESDSDTENEDKVMRRLPDNPTPLIEFANASQGILLLLVLKQHLKNLYGFSDSKIQKYS
PTESAKVYDKAVNRKSSVHFNPRQTLEFLLNDMANATLTNEVKRKIIRQYLDFKLLMEHL
DPDEEDEEGEASANARNKAINALLGGASPKNNAADTEDDESDGDEKGGASGSRKSRRGGE
SAEVAGHLNETVEAMDVIAICCPKYKDRPQIARVIQKTSNGYSVHWMAGSYSGVWAEAKK
RDGRKLVPWVDTVKESDIIYKKIALTSAHKLTNKVVQTLRSLYNAKDGTSS
NT seq
8436 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcaccactctcgctgggattgctagcctcaca
gacttattaaaccagctccctcttccatctcctctgcctgccaccaccaccaagagcctg
ctgtacaatgggaggattgcagaagaggtcaactgtctcctggcctgtcgggatgagaac
ctggtgtcccagctcgcacacagcctcaaccaggtctccacggaccacatagagttgaag
gataaccttggcagtgatgatccagagggggatatcccagttctgctacagaccgtcttg
accaggaaccccaatgttttcagggagaaaagtatgcagaatcgatacggggttcagggc
ggtattatgcagcagccaatgatgccacagtacaaaatgtctcagaattccatgcatggc
agccctgcatcttcaacctaccagcaaaccactatctcacacagtccttccagccggttt
gtaccaccacagacgacatctggaaacagatttatgcctcaacaaaatagccctgtgccc
agcccttacacccctcaaagccctccgggatatatgcagtatccacaccccccaagttac
actcagcaccaacagatacagcaagaattacatggctcccctcttgtatctgcacctaca
tattcaggaagccctcagaggccagtgcagccctgtcttatagtgcagactcagccctct
ccacagcagaatccgtctaccccagcattagtttcagtagccagccccatggttgctggc
agcatgaggaacattcatgagaacaaggtgtctggccaggtgtcaagtaattctgctaat
caccatgcagataattccaggcatgggtcaaatgaagactacctacacatggtgcacaga
ctagggaatgaggaagctgatccctccatgagaaatgcttccttcactctaagatctccc
cagtctgcgtgctctcctgcaggcagtgacggaactccaaaagcaggatccaggccaccc
cttatcttacagtctccacctccatatgcttcgccaagagatggcccaccagacatccta
ctagactctccagacagaaagaaaaagcagaagaaaatgaaaatgagcaaagaagaaaaa
gagcaggcagataaggctgcaatgtacgacataattagctctccgtctaaagactcgaca
aagcttactttaagactttcacgtgtgaaatcatcagaaatggacccacaggaagatttg
cttcctggcatggaaatcggtactgatcctgagggtgacttggcatataacaacatgcca
tgtatgggccagccccccaaaccgccagtagctccccaggatttgcaccggtccctcaat
gttgctgcacagtgtctgtcacagaatgagcaggccgcctttctgcaggcacagcaggtg
cctgttttacagcagaactcttcggtggtatcggccaaacagccacagcctcccatactg
caaccccaaggtgctcctccacagcagggagccacgcagcccctgtcagtgaccccctac
gatgaggtggaaatggacgctttggcagagatcgagaggatagagcgggagtcagccatc
gagagagagcgctgttcaaaagaagtgcaggataaagacaaacctttaaagaaacggaaa
caggactcttacccacaggagcctggagctggaggcactgccggtgctacaggtgccagt
gttggaggagggtgcagtgctgggaacaaagctgctcctcaggaggccagcgcagcaggg
aatggttctagccgaccagccctgatggtgagcatcgacctccagcaggcggggcggaca
gactcgcagggtctcccagaccccactctcccagaccccactctccctgtgcctctagac
gagggacagaaacagactgaggacccccgagggttgtccattgccattgctgctgttgct
gctcctggggaaggttccatcagcactcgacaagaagacacagctggtgtcctcaagccc
aaacctgagaaccgccccgaaactcccaggaggaagtcagatggcgaggttcagaaagca
tctgacgggcggcctgaggtcattaaacacaggcctgagacccccaagcagaaaggagga
gaaagcaaacctgaaactcctaagcataaaggtgaaatcagaccggagacccccaagcag
aaaggagagggccgaccggagacccccaaacacagacacgacaacagacgggactcctct
gccaaacctcccagttctgaaaaaaggccagaggtctccaaacatagacacgacggcaaa
actgactctatcaaagtcgaaactggaggacggggatcagagacacccaggcagagacct
gatgggcgtcctgcctcctcttctacttcagagaatcccagacgagaccaggatggccac
aagcagagatcagaggaccgtggtgatgctgagaggcatagaggagacccctccaggata
aggcggcctgacaccccaaagtcctccagcaggggcgagtatgactccaaacatggtgtc
aaatcggcaggctcccgggacagggagagagagagagacagagaaaagaaacacaggccc
gaatcaggtgagtccagggagaggcctgatagccctcgggtgaaacaagagccccgcgga
gactctagcagcaaatctcggctcgacagacctgggtttaaatcccccagcagcaaggag
gatcggcggtcagacgggagcaaaaatagaccggatggccacaagcagcagcagcagcag
cctgacagcaagccagattttcccagctacctgctagggggcaagtcgggggcactgaaa
aactttgtaattcccaaaatcaaacgggacaaggatggtaatatcactcaggatttgaaa
aggacacagtcaagagaagagaataaggtcaagatagagaagatgagcttggtggaggat
ttaaacaaaggatctaagccagtggttgtcctgcaaaaattaacttttgatgaggttcag
aaattcataaaggagaaggaggataggaatgcaaggagttcgagcaaatctggcaagaac
acaccatccttaaaatcgggtaaaggtggaatagaccagtctgtgttgaaggacttgccc
cctgagctgcttgcagagatcgagtctaccatgcctttgtgtgaacgggtaaagatgaac
aagcgaaaacgtgctactgtcaatgagaaaccaaaatatgccgaggtcagctctgatgat
gatagtaacagcgaagaggccttcgagtctgctcgaaagaaacacaagaaagatcgggat
aaggcctgggagagtgaggaggtacgtgagagacggggctcgggcgaccacaggaagagc
agtcattcacacgagggcaggaggagctcaggcagccggtaccgagaacgcagccctgag
gactcggagagcgacactccgcctcctagtctcagtgacattgccaaaaggttgaagaaa
aaagaaaaacagaaaaagagaaaagcatatgaacctaaacttacacctgaagaaatgatg
gattcatcaacgtttaagaggttctcggccagtgttgataatattttggagaacctggaa
gatatggatttcacagctttggcggatgatgatgaaattccgcaggagttactgttgggc
aaacaccagctccacgaactgggcagcgagtctgcaaaaattaaagcgatgggaattaca
tgcaggcttccttcagaaaaactggtcaaagttttaaatattttggagaagaatatacag
gatggcgcaaaactttctacactgatcaaccatgacaacgacactgaggaagaggaaagg
ctttggagagatctcataatggagagagtaacaaaatccgcggatgcttgtctcacagct
ctcaatatcatgacttctacccacatgccgaaagctgtgtatattgaagatgtgatagaa
agggtgctccaatacactaaattccacttgcaaaacactctgtatcctcagtatgatcct
gtttacagggtggatcatggaggtggtttgttgagttccagagcaaagcgggcaaagtgt
tccacccacaaacagagagcaatcgtgatgctgtacaataaagtgtgtgatattgtaagc
aatatgtcagaactgctggagatacagttgctcactgatacaaccatcctacaggtttca
tcaatgggaattacaccatttttcgtagaaggtgtcagtgagctgcagttgtgtgccatc
aagttggtgactgctgtgttctcacgctatgagaagcataggcagttaatattggaggag
atattcacatcactggcaaggctgccgacgagtaagcgaagtctgaggaacttcaggctg
aatagcagtgacactgacggagagcctatgtatatacagatggtaactgctctagttctg
cagcttattcaatgtgtggttcacctgccatcagacaaggattctaatgctgatgatgag
tatggtaaaaaggttgatcaggatgttctaattacaaattcttatgaaactgcaatgagg
acagcacagaactttctttcagtctttctaaaaaagtgtggaagcaagcagggcgaagag
gattacaggccgctgtttgagaattttgtgcaggatctattatctactgtgaacaagcca
gagtggccagctgctgagttattgcttagtcttctgggcaggctgctggtgcaccagttc
agtaacaagcaaacagagatggccctgagagtggcatcccttgattatcttggtacagtt
gcagcaaggctcaggaaggatgctgtgacaagtaaaatggatcagagcaccatagatcga
atactgaaagagtcaccgggaaccgatgagatacaacagttacagaaggccttgctagat
tacctggatataaatgcagaaactgatccatctttggctttttcccggaagttctacatt
gcacagtggttcagggacactacaactgagacagaaaaggcaatgaggtcacagaaccaa
aaagatgaggattcgtccgaggggcctcatcatgcaagagacatagaaacaacaggagat
atcatgcaaaaagcagaggctcggaagaagtgtcttcgatccatcattaaaactacacca
tctaagtttagcacgttaaaaatgaattctgattccgtggactatgaggattcctgcctg
attgtccgatatttggcctctatgaggccgtttgcacagagcttcgatatttatttaaca
cagattcttcgtgttctgggagagaatgcaattgctgttcgaactaaagccatgaaatgt
ctgtctgaggttgttgctgtggaccctagcattctggccaggcttgacatgcagcgtggt
gttcatggacggttaatggataactccacaagtgtgcgagaagcagcagtggagttactt
gggcgattcgtgttaagtcgtccacagcttactgagcagtattatgatatgctgatagag
agaatactggacaccggtatcagtgtaagaaagagggtgataaagatccttcgtgatatc
tgccttgaacagccgacttttagcaaagttacagagatgtgtgtgaaaatgattcgcaga
gtgaacgatgaagaaggcattaagaaactagtaaatgaaacattccagaagctttggttt
actcccactcccagtcatgataaggatgctatgaccagaaaaatactcaacattacagat
gtggttgctgcttgcaaagatactggttatgattggtttgaacagcttcttcagaatttg
ttgaagtcagaggaggatgcctcttacaaaccagcaaagaaagcctgtgtacagcttgta
gacaatctagtggagcacatccttaaatatgaagaatctctagctgattctgaaaacaaa
ggagtgaactccaaccgcctggtggcatgtattaccactctgtatttgttcagtaagatc
agggcacagcttatggtgaaacatgcaatgaccatgcagccatacctcaccaccaagtgc
aacactcagagtgatttcctggtcatctgtaatgttgcaaagattttggaactggtagtg
ccattgatggagcatcccagtgaaactttccttgctactattgaggaagatctcatgaaa
ctcatcattaaatatggcatgacagtggtgcaacattgtgtgagttgtcttggggcagtt
gttaataaagtgacacacaactacaagtttgtgtgggcatgcttcaacagatattatggt
gccataactaagctaaaaacacagaaccaagaagatccaaacagcacaatccttgctgcc
aataaacctgcactcctgcgctcactcttcactgttggtgctctgtgtcgacatttcgac
tttgaccaagaagagtttaaaggcaacaccaaggttgttataaaagaaaaggtactcgaa
ttgctgctgtattttaccaggcatgcagatgaggaggtgcaaacgaaggccatcattggt
ttagggttttcttttattcagcaccctagtttgatgtttgagcaggatgtaaagactcta
tataatggtatcctgtcagacaagaacggttctgtgaacttgaaaatccaggtgctgaag
aaccttcaaacttacctgcaggaggaggacacccgcatgcaggcggctgaccgggaatgg
aagaaattgtcaaagcaagaggatctgaaagaaatgggcgatatttcctcaggcatgagc
agttccataatgcagctctacctcaaacaggttctcgaggctttcttccacacgcagtcc
aatgtacgccacttcgctctaaatgttattgccctgacactaaaccaaggtctcattcac
ccagtacagtgtgtgccatacctgatagccatgggtacagatcctgagcctaccatgagg
aacaaatctgaccagcagttgattgaaattgataagaaatacacaggttttattcatatg
aaagctgtggctgggataaagatgtcataccaggtacaacaggcaatctgggcagcccac
aacacaataataaggggattcagacaggatgagcaaaacactgccttgtgttcccacctt
ttcaccatggtccgtggaaaccgccagcacagacgagcatttcttatttctctgctcaac
ctctttgatgacagtgcaaaaactgacgtgaacatgctgttgtacatagcggacaatctg
gcctgtttcccattccagacgcaggaggagccccttttcgtaatgcatcacattgacatc
acgctttctgtctcaggcagtaacctactgcagtcctttaaagagtcccttctgaaggaa
gccaaaccaaaagagcaaaagtactgctcagaggaagaggaagaggatgaggagcaaacc
agcgacagtgaggatgaggcagtgaggcgacccaggaagacctgtcagcgtgtcgactca
gactctgaatcagattctgacactgagaatgaggacaaggtgatgaggaggttaccggac
aatcccacaccgctcatcgaatttgccaatgcttcccaaggaatcctccttctgctggtc
ctaaagcagcatctaaagaatctctatggattttctgacagtaaaatccagaagtattct
ccaactgaatcagcgaaagtgtacgacaaagctgtaaacaggaagtcttcagtgcatttt
aaccctcgacagacgttggagtttcttttgaatgatatggctaatgcaacattaactaat
gaggttaagaggaagatcatcagacagtatcttgatttcaagttactaatggaacactta
gatcctgatgaagaggatgaggagggtgaggctagtgcaaatgcccgaaacaaagctatc
aacgcactgctggggggagccagtccaaaaaacaatgctgctgacactgaggatgatgag
agcgatggagatgaaaaaggaggagcctccgggtcaagaaagtccagaaggggaggagag
tcagcagaagttgcaggccacttgaatgaaactgtggaagccatggatgttattgctatc
tgctgcccgaagtacaaggaccggccacagattgccagagttatacagaagaccagcaac
ggttacagtgttcattggatggcaggctcttatagtggagtctgggctgaggctaagaaa
cgggatggacgcaaactggtgccttgggtagacactgtaaaagagtcggacatcatttac
aagaaaattgctctgacgagcgcacataagctgactaataaagttgttcagactttacga
tcgctgtataatgcgaaggatggaacttccagctaa
DBGET
integrated database retrieval system
