Polyodon spathula (Mississippi paddlefish): 121304877
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Entry
121304877 CDS
T07273
Name
(RefSeq) neuronal PAS domain-containing protein 1-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121304877
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121304877
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
121304877
NCBI-ProteinID:
XP_041092223
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All DBs
Position
40:377135..403609
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AA seq
799 aa
AA seq
DB search
MCKAELCPCIVQSLLWGLLIVSADSSSVVLITFLSAKEEGNSISGAHLAMPGSLQSLRKE
KSRNAARSRRGKENFEFFELAKMLPLPGAITSQLDKASVIRLSISYLRMRDFCRQGEPSW
SPVLEGGPHNKAVGRTPMSLATDLFEHHLGGHLLQSLDGFAFVVSHEGRFLYISETVSIY
LGLSQVELTGSSVFDYIHPADHVEMAERLGMRSYRGRGVSQATNENTSSSASTSSLAETP
EPEEDSAYRSFFIRMKSTLTKRGLHIKSSGYKVIHVTGRIRSRPTHSPAPSVQRELGLVA
LAHTLPPSTLTEVRMESHMFVFRVNMDLQVIYCENRIKEYMDLSPEELIGQNCYHFIHVE
DVDSIRHSHEDLLVKGQVVTGYYRWLQRRGGFLWIQSCATISFNHKSPQDRNIIWVNYVL
SRPELLDIPLDLQQLGDSPGLSRKPQTTDDWPQEDKGTHRGKDTTPLQNLDSGNASKIRA
VSSRGSQSEEMRKRSRRCVSVEGPLETRAKGNHSPLSSELESESESEREAEPLSKHIKVE
ERRLESGGSEAEEEEEEEAAGRIPNGCAVIQHRKFPSTSSYSEHEIKTELTGSDVATSEI
WGLHSLPCTPLDTEPETGQSHGNGPRICIPDSVLTPPGEDAPPKALFTPSVEAVSPPLSA
SPLSREERLFPAPSMPDFELLQRLGFGGGVRGLGGISRVVLPLPRSMGGPTPHSLYAPST
IRYAPAELHLPQAGARHQRLSMQSPDLQADPKPPPLFPPPQRLSGLPPFSGFTALDTPFS
ALSFSINGLRGPSTDKDEN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaaagccgagctgtgcccttgcatcgtccagtctcttttatggggattattgatc
gtgtctgctgattccagcagcgtggtcctgatcacttttctatctgccaaggaagagggg
aacagcatttcaggggcacatctagccatgccaggcagcctgcagtctctgcgcaaggag
aaatcgaggaacgctgctcgctcgcgccgaggaaaggagaattttgagttcttcgaattg
gccaagatgctgcccctgccgggtgccatcaccagccagctggacaaggcctccgtcatc
agactgagcatcagctacctgcgcatgagagacttctgcagacagggggagccgtcctgg
agccccgtgctggagggaggaccgcacaacaaggctgtggggaggactccgatgtcactg
gccaccgatctcttcgaacaccacctagggggacacctgctacagtcactagatggcttc
gcctttgtggtcagtcacgaggggagatttctctacatctcagagacggtgtctatctac
cttggtctctcacaggtggagctaacaggcagcagtgtctttgactacatccacccagca
gatcacgtggagatggctgagcggctaggaatgaggtcataccgcggcaggggtgtgtcc
caggcaaccaatgagaacacatccagctcagcatccacctcttcattggctgagacgcca
gagccagaggaggactctgcctatcgcagtttcttcatccggatgaaatccactctcaca
aagcgggggttgcacatcaagtcttccggatacaaggtgatacatgtgacaggtcggatt
cgcagtcggcccacccacagccctgccccctctgtgcagcgggagctgggattggtggcc
ttggctcacacgctcccaccctccactctcactgaagtgcgcatggagagtcacatgttc
gtcttccgggtcaacatggatctgcaggtcatctactgtgagaacaggatcaaagaatac
atggacctgagcccagaagagctgattgggcagaattgctaccacttcattcacgtggag
gatgtggactcaatccgacacagccacgaggacttgctagtgaagggtcaggtggtgact
gggtattatcgttggctccaacggcgcggtggattcctatggatccagtcctgtgccacc
atctccttcaaccacaagtccccccaagacaggaacatcatctgggtcaactacgtgctc
agccggccggagctcttggacattcccctggacctccagcagctgggcgactcccctggc
ctgtccagaaagccccagacgacagacgactggccacaagaagacaagggtacgcataga
ggtaaagacaccacacctctccagaacctggacagtggcaatgcgtcaaagattagagct
gtatcctcccgagggagccaatccgaggaaatgaggaagaggagccggcggtgtgtctct
gtggaggggcccctggaaacaagggcaaaggggaaccacagccctttgtcctcggaactg
gagagcgagagcgagagtgagagagaggcagaacctctgtccaagcacatcaaagtggag
gagcggaggctggagtctggaggcagtgaggccgaggaggaggaggaggaagaggcggca
gggaggatcccaaatgggtgtgcagtgatccagcacaggaaattcccttcaacatcttcc
tactctgaacatgagatcaaaacggagctgactgggagtgacgtagccacttcagagatc
tggggcctccattctctcccttgcaccccactggacactgagcctgaaactgggcaatcg
catgggaacggtccccgtatctgcattcctgactctgtcctgaccccccctggagaagat
gcccctcctaaagccttgttcaccccctccgtggaagcggtctccccaccgctctctgct
tctcctctctcccgggaggaaagactattccctgctccctccatgcccgatttcgaactc
ctgcagaggctggggttcggtggaggagttagagggctgggagggatcagtcgggtggtc
ctccctttgcctcgatcaatgggaggccccactcctcacagcctatatgcccccagcacc
atccgctatgcccccgcagagctccacctccctcaggctggggctcgtcaccagcgcctc
tccatgcagtccccggacctccaggcagaccccaagcccccgccgctgttcccccccccc
cagaggctcagtgggttgcctcccttcagtggcttcactgccctggacaccccattctca
gctctgtctttctccatcaacgggctccgtggtccttctaccgataaagacgaaaactga
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