Polyodon spathula (Mississippi paddlefish): 121305002
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Entry
121305002 CDS
T07273
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04517
IgSF CAM signaling
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121305002
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121305002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121305002
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121305002
Intermediate filaments
Intermediate filament-binding proteins
121305002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SLATT_6
Snapin_Pallidin
Fusion_gly
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
121305002
NCBI-ProteinID:
XP_041092402
LinkDB
All DBs
Position
40:1534464..1583083
Genome browser
AA seq
2559 aa
AA seq
DB search
MANVSTDLDNAEAQRQFNNNNHPASTPEQPWDIESTTARLFECSRIRALADERDAVQKKT
FTKWVNSHLARVACRIADLYNDLRDGYMLTRLLEVLSGEQLPKPTRGRMRIHCLENVDKA
LTFLKEQRVHLENVGSHDIVDGNHRLSLGLIWTIILRFQIQVIKIETEDNRETRSAKDAL
LLWCQMKTAGYPEVSIQNFTSSWRDGLAFNALIHKHRPDLIEFSKLSKSNATHNLQQAFN
SAEQHLGLTKLLDPEDVNTENPDEKSIITYIVSFYHYFSKMKALAVEGKRVGKVLDKALE
TEKIIERYEVLASELLEWIEKTIGIISNQKFANSLVGVQQQLQAFTTYCTTEKPIKFQEK
GNLEVLLFTIQSKLRANNQKLYVPHEGKLISEINKAWERLEKAEHERGVALRTELIRQEK
LELLAQRFDHKATMREAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADISSYEERIA
VVVELSAEMESESYYDIRRIVAQKDNILGQWSLLKELVTGRRARLEKNLTLQNTFQEMVY
MIDWMEEMQVLLLAKDFGKHLLEVDDLLQKHGLLEADISVQAERVKTLNAAALKFTSMEG
YQPCDPQVICNRVNHVSTCLEELKQLAEKRRSELEESRQLWAFFQEIEESEAWIWEKMSI
LATQTFGKDLSSILKLLNKHKILAGELLGRRSLLQQTIKKGKQILTQKCFGTGHIQEKIM
EVKAQWKKLEDHAGLRLHKLQEALSFFQFNAETDDLLVWLQDTYRLVSSEDFGHDEYSTQ
SLMKKHKGVAEEIEKHRIYLVSLRKHKVSLSAQYRDLDEVQNRMAEVEQLYMEVTEVTAL
RQQWLHDALAVYRMFSEVNACEVWIDEKEQWLNKMEIPENLEDVEVVAHRFESLDQEMNS
LMERILDVNQIVQKLLDGDHPSAVEVRGCQDHLNGRWNRIVELVEQKKDHLNSVVRIQNY
LLECTEMQSQISEKRKAIETTQYTGTDLGGVLALQRKLSTMEGALAILEPKLIILQQEAE
ELAATHPSQAMEILMQFEQISVEWDELKRTLQGCEDSLTVASRLQQFIQDLDNFLTWLVR
TQTAVASEELPNNLEEAELLINQHATLKEEIGRYEEDYNQIQAVNKLLALEEADLPYISL
QQWLQKLDVGWNKLLEMWESRREVLVQSHIFHLFLRDVKQAESFLNNQESALAHVELPTT
VETVEATIKKHRDFSTTMDLNLQKIKTVMEAGESLIGQGSIYSERIKERIEIIHTRSKKN
RGLAEEWLQKLLDQWELQRFLQDCHELGDWVAEKMLMARDTSHDEAHKLHKKWLKHQAFM
AELAQNKDWLEKIEKEGQQLIQEKPELGSIVQKKLGEIRECWVELESTTQDKARQLFEAN
KADLLVQSYAELDQQLLQLEGQLGQVDQGRDLTSINKQLKQLQTMEAQMEDWYKEVGELQ
VQATSIPQQGAIKDSVNQKQNMVETRIVWLIEPLKERRRILLASKEVHQVSRDLEDEILW
IQERLPLATSNEHGNSLQAVQQLMKKNQSLQRELQGHRGRVDDVLDRAGLIASIRSPEAD
CVRYSLDYLQQLWDTLRSETEQRQINLDGMYQAQQYYFDMAEVETWLSEQELHMMNEEKG
KDEASTLQLLKKHLVLEQTIEDYAETIGLLSQQCRSLLELGHPDSEQISKRQSQIDRLYV
SLKDLVEERKGKLEQQYWLYQLNREVDELEQWIAEKEVVAGSPELGQDSEHVTLLQEKFT
EFASETGSLGQERVLAVNQMADELIDYGHADAATIAEWKDGVNEAWADLLELMETRAQML
AASHQLHKFFDDCREVLSQIEDKQKRLPEVRARQGGSANTNTLQRLMQSFERDIQQLVTQ
VRQLQESAAQLRTVYAGEKAEAIVLREQEVMQAWKELLISCEECRVQITTATDKLRFFGI
ARDLVSWMDSVICQIGMGEKPRDVSSVEVLMNYHQGLKNEIEARSKNMVQCVEMGKMLLA
ARNPATEEIKEKLEKVIAKQKELSEKWDKHWEWLQHMLEVHQFAQEAVVADAWLTAQEPF
IKSQELGSSVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTSLEKLKAEQSKLPPTPMLG
RKVFLDPQEAGPAWTPSSVMRQTIYEQVEPKTERHPEITSSSVKKLGTTAASSYTPVMNG
TKYGSLDPRNEPKIVYVHQELKPERLLPKIDHLADCVQPALEIKRLERERQEQRLTNPHR
EGAQELVNGTQEHAGVNASRSDLQTEKKRQERQTSSDQEIRARRDELPQERRRRDRRLER
QSSSDEDVPPRKEDLRRERHERKMERQESSEQDRSEKRTGGEKRSTLADIVEQLQERDQS
QAAAQVRERDPGPRLHNGLPERTPRPDRPRARDRPKPRRRPRPKDPSASLGEARRSRSAP
AQSTCSAPPAPPSHTAQKEGCMFRKQDVEIEKKSSNRSWVNLYCIVTNGEMGFYKDAKNT
TTTFNGEPIISLNNCICDVANGYKKKKNVFKLKTVEGSEFFFHTRDETDLKNWVETITTA
ISEHEEIAKWAQTQPTTSSTDESRKTAEERRLSVSSKKK
NT seq
7680 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtaagcacagacctggacaatgcagaggcacagaggcagttcaacaacaat
aaccatcccgccagcaccccggaacagccctgggacatagagagcacgacagccaggctc
tttgagtgctcccggatcagagcactggcagacgagcgcgatgctgttcagaagaaaacc
ttcaccaagtgggtgaactctcatttggcgcgggtcgcctgtcgaatcgctgacctctac
aatgacctccgagatggatacatgctgaccaggctgctggaggtgctgtctggggaacag
ctgcccaagcccacacggggtcgcatgaggatccactgcctggagaacgtggacaaggct
ctgacgttcctcaaagagcaacgcgtccacctggagaacgtgggctcccacgacatcgtc
gacggcaaccatcgtctctcactgggcctaatttggaccatcatcctccgctttcagatt
caggtgattaagatcgagacagaagacaatagggaaactcgttcagccaaggatgcgctg
cttctctggtgtcagatgaagaccgctggctatcccgaagtgagcattcaaaacttcaca
agcagctggcgagacgggctagccttcaatgctctgatccataaacacaggccagatctg
atcgaattcagcaagctgagcaaatccaacgccacccacaatctccagcaggccttcaac
agtgcagagcagcacctcggactgaccaaacttctggacccagaagatgtcaacacagag
aatccagatgaaaagtcaatcatcacctacatcgtgtccttttaccattacttctccaaa
atgaaagctctggctgtcgaggggaagagagtcggaaaggtcctggataaggcactggag
acggagaagattatcgagcggtatgaagtcctggcctccgagctgctggagtggatcgag
aagaccatcggtattatcagcaaccagaaattcgccaactccctggtcggggtacagcag
caactgcaggctttcacgacctactgtacaactgagaagcccatcaaatttcaggagaag
ggaaacctggaggttctcctgttcaccatccaaagcaaactgagagctaacaaccagaaa
ctgtacgtgcctcacgagggcaagctcatctctgagatcaacaaggcctgggaacgcttg
gagaaggcggagcatgagaggggcgtggctctgaggacagagctgattcgccaggagaag
ctggaactcctggctcagcgctttgatcacaaagccaccatgagggaggcgtggctgaat
gagaaccaaagactcgtctcacaggacaacttcggttacgacctaccggcagtggaggcg
gcgatgaagaagcatgaagccatcgaggcggacatctcatcgtacgaggagcgcatcgcc
gtggtcgtggagctgtcggccgagatggagtccgagagctactatgacatccggcgcatc
gttgctcagaaggacaacatcctggggcagtggagcctgctgaaggagctggtgaccggg
cgccgggctcgcctggagaagaatctcacactgcagaacaccttccaggagatggtctac
atgatcgactggatggaggagatgcaggtgctgctgctcgccaaggactttggaaagcat
ttgctggaggtggatgacctgcttcagaaacacgggctgctggaagctgacatctccgtg
caggcagagcgggtgaagaccctcaacgcggcagctctcaaattcaccagcatggaaggt
taccagccctgtgatcctcaggtaatctgcaacagggtgaaccatgttagcacctgcctg
gaagaactcaaacagctggcagaaaagaggcgctcggagctggaagaatcccgacagctg
tgggccttcttccaggaaatagaggaatctgaggcctggatctgggaaaagatgtccatc
ctggccacccagaccttcgggaaggacctgagcagcatcttgaagctgctgaacaagcac
aaaatcctggccggggagctcttgggtcgccgctccctcctccaacagaccataaagaag
ggcaagcagatcctgactcagaaatgctttgggacgggacacatccaggagaagatcatg
gaggtgaaggcccagtggaagaagcttgaagaccacgcgggcttgaggctccacaagctc
caggaggccctcagcttcttccagttcaacgccgaaacggacgacctcttagtctggctg
caggacacctaccggctggtctccagcgaggacttcggccacgatgagtactccacccag
tccttgatgaaaaagcacaaaggggtggctgaggagatcgagaagcaccggatctacttg
gtgtctctccgcaagcacaaggtcagcctgtctgcgcagtaccgagacctggacgaggtg
cagaaccgcatggcagaggtggagcagctctacatggaggtgaccgaagtgactgctctg
aggcagcagtggctccacgatgccctggcggtctaccgcatgttcagcgaggtcaacgcc
tgcgaggtctggatcgacgagaaggagcagtggctcaacaagatggaaatcccagagaat
ctggaagacgtggaggtggtggcacacaggtttgagagtcttgaccaggagatgaacagt
ctgatggaacggattctggacgtcaatcagattgtccagaagcttctggacggtgatcac
ccgagcgctgtagaggtcagaggctgccaggaccacctcaatggcaggtggaaccggatt
gtggagctggtggagcagaagaaggaccacctgaattccgtcgtgcgtatccagaattac
ttgctggagtgcactgagatgcagtctcagatcagcgagaagaggaaagccatagagacc
acccagtacacaggtactgatctgggaggggtgctggcccttcagaggaagctctccacc
atggagggagccttggccatcctggagcccaagctgatcatccttcagcaagaggctgaa
gaactggcagccacccacccctcccaagccatggagatcttgatgcagtttgagcagatc
agcgtggagtgggacgagctcaagaggaccctacaagggtgtgaagattccctcactgtg
gccagcaggctccaacagttcatccaagacctggacaacttcttgacctggctggtgcgc
acccagacggctgtagcttcagaggagctccccaacaacctggaggaagctgaactgctc
atcaaccagcacgccaccttgaaggaggagattggccgctacgaggaggactacaaccaa
atccaggcggtcaacaagctcctggccctggaggaggctgacctgccctacatctccctc
cagcagtggctgcagaagctggacgtgggctggaacaagttgctggagatgtgggagagc
cggagggaggtcctggtgcagtctcacatattccacctcttcctccgtgacgtaaagcag
gcagaatccttcctcaataaccaggaatcggccctggctcatgtagagctgcccactacc
gtggagacagtggaagccactataaagaagcacagagacttctccaccaccatggacctg
aacttgcagaagatcaaaactgtgatggaggctggggagagtctgattggacagggaagc
atctactctgaacgcatcaaggagaggattgagatcatccacaccaggagtaaaaagaac
cgaggcttggctgaggaatggcttcagaagctgctagaccagtgggagctacagaggttc
ttacaggattgccatgagctgggcgactgggtcgcggaaaaaatgctgatggctcgcgac
acatctcacgacgaggctcataaactgcacaagaaatggctcaagcaccaggctttcatg
gctgagctagcccagaacaaagactggctggagaagattgagaaggaaggccagcagctg
atccaggagaagccagaactgggctctatcgtgcagaagaagctgggtgagatcagggag
tgctgggtggagctggagtccaccacacaggacaaggctcggcagcttttcgaggccaac
aaggcagacttgctggtgcagagctacgccgagctggatcagcagctgctccagctcgag
gggcagctgggccaggtggaccagggccgagacctcaccagcatcaacaaacagctcaag
cagctccagactatggaggcgcagatggaggactggtataaggaagtgggggagctgcag
gtgcaggcgacctccatcccccagcagggggcgatcaaggacagcgttaaccaaaagcag
aacatggtggagacgcggatcgtctggctgattgagcccctcaaagagaggcggcgcata
ctgctggcatccaaggaggtgcaccaagtcagccgcgacctggaggacgaaatcctgtgg
attcaggagagacttcccttggcaacctccaatgagcatggaaacagtctgcaggccgta
cagcagctcatgaagaagaatcagtctctgcagagggagctccagggacacagggggagg
gtggatgacgtgttggacagggctgggctgatcgcctccattcgcagccccgaggcggac
tgcgtgcggtacagcctggactacctgcagcagctgtgggacaccttgcgctcggagaca
gagcagcggcagatcaacctggacggcatgtaccaggctcagcagtactacttcgacatg
gccgaggtggaaacgtggctgagcgaacaggagctgcacatgatgaacgaggagaaaggc
aaggatgaagccagcaccctccaactgttaaagaagcacctggtcctggagcagaccatc
gaggattacgccgagaccatcggcttgctgtcccaacagtgtcgctctctcctggagctg
ggccacccagacagcgaacagatcagcaagcgtcagtcccagatcgaccggctctacgtg
tctctgaaggacctggtggaggagcgcaaggggaagctggagcagcagtactggctctac
cagctgaaccgggaggtggatgagctggagcagtggatagctgagaaggaggtggtggca
gggtcaccagagctgggacaggattccgagcacgtcacgttgctccaggagaagttcacc
gagtttgcctcagaaacgggctcactcggtcaggaacgggtgttggcggtcaaccagatg
gcagacgagctgatcgactatggccacgcggacgcggccaccatcgcggagtggaaggac
ggggtaaacgaggcctgggctgacctgctggagctcatggagacccgggcgcagatgctg
gccgcctctcaccaactgcacaagttcttcgacgactgtcgtgaggtgctctcgcagatc
gaggacaagcagaagaggctgcctgaagtgcgggcccgccagggaggcagcgccaacacc
aataccttgcagaggctcatgcagtccttcgagagggacatccagcagcttgttacccag
gtaagacagcttcaggaaagcgccgctcaactgcggacggtctacgctggcgagaaagca
gaagccatcgtcctgagggagcaggaagtgatgcaagcctggaaggagctgctgatttcc
tgtgaggagtgccgggtgcagatcaccaccgcgacggacaagctgcgcttcttcggaatc
gcgcgggatctggtttcgtggatggacagcgttatctgtcagatcggcatgggagagaaa
ccaagagacgtatcgtcagttgaggtgctgatgaattatcaccaagggctgaagaacgag
atcgaagcccgcagcaagaacatggtgcagtgcgtggagatgggcaagatgctgctggca
gccaggaatccagcgacggaggagattaaggagaaactggagaaggtgatcgcaaagcag
aaagaactgtcggagaaatgggacaagcattgggaatggctacagcacatgctggaggtg
caccagtttgcccaggaagctgtggtagcggacgcctggctcaccgcccaggagcccttc
atcaagagccaggagctgggcagcagcgtggacgaggtggagcagctcatccgccggcac
gaagccttccgcaaagcagctgcaacctgggaggagaggttcagttcactgaggagactt
acctcgctggagaagttgaaagccgagcagagtaagctgcccccgacgccgatgctgggt
cgaaaggtcttcttggacccccaggaggctggcccagcttggaccccttcctcggtcatg
agacagactatctacgagcaggtcgaacccaaaaccgagaggcatccagaaatcacctcc
tcttccgtcaagaagttggggaccaccgcagcgtcctcctacacaccggtgatgaatggg
acaaaatatgggagcctggacccccgaaacgaaccaaagatagtctatgttcatcaggag
ctgaaaccagagcgtctgctgcccaagatcgaccacttggcagactgcgtccagcccgct
ttggaaatcaagagactagaaagagaaaggcaagaacagagactgactaaccctcaccgg
gagggggctcaagagctggtcaacgggacccaggagcacgcaggcgtaaatgcaagccga
tcagatctgcagacggagaagaagaggcaggagagacagacttctagtgaccaggagatc
cgggccaggagagacgagctgcctcaggagaggaggaggcgcgaccggaggctggagagg
cagtcgtctagcgacgaggacgtcccgccacggaaggaggatctgcgtcgggagaggcac
gaacgcaagatggaaagacaagagtccagcgaacaggatcgctctgagaagcggacagga
ggggagaagcggtcaactctagccgacattgtggaacagctgcaggagagagatcagtcc
caggctgcagctcaggtccgagagagggaccctggacctcgcctccacaatgggctgccg
gagcgcactcctagaccagaccgcccacgagccagggaccgacccaaacctcgtaggaga
ccccgacccaaagaccccagcgcctctcttggagaggcccggcggtcgcgctcagccccg
gcccagagcacctgctccgctccccctgctcccccttctcacacagcccagaaggagggc
tgcatgttccgcaagcaagacgtggagatcgaaaagaaatcctcaaacaggtcctgggta
aacctgtactgcattgtgacaaacggagagatgggcttctataaagacgccaagaacacc
acgactaccttcaatggggagccaatcatcagcctgaacaactgcatctgcgacgtggcc
aacggatacaagaagaagaagaacgtcttcaaactcaagacagtggaaggaagcgagttc
tttttccacactagagacgagacggatctcaagaactgggtcgagacgataacgactgcc
atctcggagcacgaggagattgcgaaatgggcccagacccagcctactacctcttcgacg
gacgaatcgcggaagaccgcggaggagaggcgcctaagtgtctcgtccaagaagaaatga
DBGET
integrated database retrieval system
