Polyodon spathula (Mississippi paddlefish): 121305034
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Entry
121305034 CDS
T07273
Name
(RefSeq) thrombospondin-4-like
KO
K04659
thrombospondin 2/3/4/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04145
Phagosome
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121305034
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121305034
09144 Cellular community - eukaryotes
04510 Focal adhesion
121305034
09142 Cell motility
04820 Cytoskeleton in muscle cells
121305034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121305034
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121305034
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121305034
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Opsonins
121305034
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121305034
Exosomal proteins of colorectal cancer cells
121305034
Exosomal proteins of bladder cancer cells
121305034
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121305034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
PigL_N
Motif
Other DBs
NCBI-GeneID:
121305034
NCBI-ProteinID:
XP_041092467
LinkDB
All DBs
Position
2:complement(99335433..99360435)
Genome browser
AA seq
957 aa
AA seq
DB search
MTLWKGLLFILHVILLLRSSLSVPGEYKVYNLLSTPGYITEIVQQRLTAPSVNEVYILST
FKLQSAKSGTTIFGLYSPKDNTKYFEFFVLGKLNRAILRYLKSDGKLNVVTFNNVQLADG
KRHTVLFRLSGLEQGSSTVELYIDCSLIDTVRDLPTAFTGLPQGPNSLELRTLQKRPLDT
LEELKLVIGGSLTRVAALQECLLQQSDSAQNIVHRNSGISGDTERQLITQMNQLTQVIGE
LKEVMTQQVKETAFLRNTISECQACGLGGINPGIPDFDSKPKCTPGSCFRDDLCSETEAG
FECGPCPDGYTGDGVHCDDIDECLFNPCFPGVRCINTVPGFRCDACPLGYTGPIVKGLGI
TYAKTTKQVCVDIDECNNGKNGGCAPNSICTNTKGSFRCGGCKAGYIGDQAKGCKPERSC
GKGQLNTCHIHAQCVVQRDGNISCVCGIGWAGNGYHCGKDTDIDGYPDEELKCKDIFCRK
DNCMYVPNSGQEDADQDGYGNACDDDADGDGIPNEQDNCVLNPNIDQKNSDLDSFGDACD
NCRTAVNPDQRDTDNDGKGDACDDDMDGDGIKNFLDNCQRVPNLDQKDRDNDGVGDACDS
CIDVSNPNQSDIDNDLVGDSCDTNQDSDGDGHQDSKDNCPNVINSSQLDTDKDGIGDECD
DDDDNDGIPDLLSPGPDNCRLVPNQDQTDDNGDGVGDICESDFDQDTVIDRIDICPENAE
VTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTG
PGEHLRNSLWHTGDSTDQVRLLWKDPRNVGWKDKVSYRWFLQHRPQVGYIRVQFYEGSEL
VADSGVTIDTTMRGGRLGVFCFSQENIIWSNLNYRCNDTIPEDFQEFRAQHFGSDGV
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgactctgtggaaagggctgttattcattttgcatgttattttactgttgcgctccagt
ttgtctgtgccaggagaatacaaagtttacaacctgctttcaacacctggatacataaca
gagatcgtgcagcagagactcacggctccctccgtaaatgaagtctacattctttcaacg
tttaaactgcagtctgccaagtctggcaccacaatcttcggcctctactctccaaaggat
aacaccaagtattttgagttttttgtgcttgggaaactcaacagagcaattctacgatat
ttgaagagcgatggcaagctaaatgtggtcacattcaacaacgtccagctggctgatgga
aagcgacacactgtgttgtttaggctgagtgggttagagcaaggatccagcacagtggag
ctgtacatcgactgcagcctgatagacacagtgagggacttaccaacagcattcaccgga
ctgccacaaggacccaactcgctggagctgcggacactccagaaaagaccactggacact
ctggaggagctgaaactagtaatcgggggttcccttacaagagtagcagcgctccaagaa
tgcctactgcagcaaagcgactctgcacagaatatagtgcataggaactcaggaatttca
ggtgacactgagagacagctgattacccagatgaatcagctgacacaggttattggagag
ctgaaagaagtaatgacgcaacaggtgaaagaaacagctttcctgaggaacaccatatcc
gaatgccaggcctgtgggttgggtggaattaatcctggaatcccagactttgactctaaa
cccaagtgcactccgggctcttgtttccgtgacgacctgtgtagcgagacagaggctgga
ttcgagtgtggtccatgccctgacgggtacacaggcgacggggttcattgtgatgatatt
gatgagtgtctgtttaacccatgtttccctggggtccgttgtattaacactgtgccagga
tttaggtgtgatgcatgtcctctggggtatactggtcccattgtgaagggattagggatc
acctatgccaagactactaaacaggtctgtgttgatattgatgaatgtaacaatggcaaa
aatggaggttgtgcaccaaactccatctgtacaaatactaagggctcattccgctgtgga
ggttgtaaggctgggtacatcggagaccaagccaagggctgcaagccagaaagaagctgt
ggtaaagggcagctgaacacctgccacatccatgcgcagtgcgtcgtgcagagggacggg
aacatcagctgcgtgtgtggcattggctgggctggcaatggttatcactgtggaaaggat
acagatattgacggctaccctgatgaagagctcaagtgtaaagatatattctgtagaaag
gataactgcatgtacgttccaaactccggacaagaagatgcagaccaggatggatacggg
aatgcttgtgatgacgatgcagatggcgacggcattcccaacgagcaggataactgcgtt
ctgaaccccaacattgaccagaagaacagcgatttggatagctttggggacgcctgtgat
aactgccgcactgcagtgaaccctgaccagagggacactgacaatgacggcaagggagac
gcctgcgatgatgacatggatggggacggcatcaagaatttcttggacaactgccagcgt
gtccccaaccttgaccagaaggacagagacaatgatggagtgggggacgcctgtgacagc
tgtattgacgtcagcaacccaaaccagtcagatatcgataacgatcttgtgggagactcc
tgtgatacaaaccaagacagcgatggagatgggcaccaggacagcaaggacaattgcccc
aacgtgattaacagctcccagttggacacagacaaggacgggataggagatgagtgtgat
gatgatgatgacaacgatggcattcctgatctcctttcaccgggaccagacaactgtaga
ctggtgcccaaccaagaccagactgatgataatggggatggagtaggtgacatctgtgaa
agtgattttgaccaggacacagtgattgacaggatcgatatctgtcccgagaatgctgag
gtcaccctgacagatttcagagcctaccagactgtcgtcctcgaccccgagggagacgct
cagattgatcccaactgggtggttctcaatcagggaatggagattgtgcagaccatgaat
agtgatcctggactggcaattggttacactgccttcaatggagtggactttgagggcact
ttccacgtgaacactgtgactgatgatgactacgctggcttcatcttcggctaccaggac
agctccagcttctacgtggtcatgtggaagcagacagaacaaacctattggcaagccacg
ccgtttagagccgtggctgaacccggcattcagctcaaggctgtcaagtcaaagactggc
cctggggagcacctgcgtaactctctgtggcacacaggcgactccacagaccaggtgagg
ctgctgtggaaggacccccgcaacgtgggctggaaggacaaggtctcctaccgctggttc
ctgcagcacagaccccaggtggggtacatcagggtacaattttatgaaggctctgaacta
gtggctgattctggagtgactatcgacaccaccatgcgcgggggaaggcttggcgtgttt
tgcttctcccaggagaacataatttggtccaacctgaactatcgctgcaatgatacaatc
cctgaggactttcaggagttcagagcccagcacttcggaagtgatggggtttaa
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