Polyodon spathula (Mississippi paddlefish): 121305238
Help
Entry
121305238 CDS
T07273
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121305238
09122 Translation
03013 Nucleocytoplasmic transport
121305238
03015 mRNA surveillance pathway
121305238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121305238
03041 Spliceosome [BR:
pspa03041
]
121305238
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121305238
Spliceosome [BR:
pspa03041
]
Complex C
Other components
EJC/TREX
121305238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121305238
NCBI-ProteinID:
XP_041092720
LinkDB
All DBs
Position
42:1664075..1729405
Genome browser
AA seq
1977 aa
AA seq
DB search
MAELEDVSLDGKPLHSLRVADLRAALEQRGLPKSGQKNALVKRLKGALMLENLQKHSTPH
SGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLERKAREAAEAEETDSTSVQEEESPQE
DKSEGYDSVSCQADQEESLAASLPKCKAVPARASSSPQSQRRSSTRTVRQSPARPQPAEL
DSENLLCPVTAYSPVPELQTAEPARTRRSRHSRDDFSLDPSSSPVPDRTADGAEQSPRES
RARRSSFRESKDSLAAPSTVSVVAPPPPAQQTGHADLVVRAEAQSPGPRAVASLSVRVVG
GSTKISGSSVVMSGVSGGVDGEIRGAPPTYVKPQQQESAEMGKDVMLTEGASGVEVVGGG
EEKAAPKESRLATTMKDNDDDEDKGRDEELNLTLEKRKSMPEVVAVGSVQGSILKHASVE
KTKAKLDLSAGSSLMLAKAEEDPEAPRGRPREVLGKGGIMETGFTETLEKSKAKESSGAP
LKVEEAQKTLEMLGKPAEVSKPVASEILGLGQTSRSTERKEGELPEKAKLISITSPEGHW
KSSPAVLRAVGGSVPMSVEPKLALEMSKEVDSVTDNKPVQDSTAAPVEKTVAETFVSATK
QRETEKNEKADAVLLHYSSASVEQAAQIDKPEEGASEKITKQATREKEIEIDKRKDPKEV
STAKTTDKQELDTQAFKPKEVSGESSQASEKGAVKQRKEVPAVPENLPFNLKLQTAMPQK
DPAIPKQGPHKGAASEEAEATVKVTTEEVFQPGKTEGVQILKLDRVLQPEKGVGEMTGVP
EQARAIQSHLPLSKRGRDLGTSDKKQEETDIKMPATEMESSLKAAHPEKLAGGEDSSKIS
QTPLKEVPALHKLAQETCRFSENLTVGSPAPEPESVEVTAEVLSQKQKETLVIPTQTPLT
LQVQSSPKNFRVFRDTPPSPEAGAPPKKIQVFEDGLPAPEHPKKSFQTCGFAERSIPEPK
PEKAPLVQQETERLASLEQASEAGQLPKESGYATSREEGPRDATKVTETWKEGEVSTTAE
MSPSDPKPGSESVSLKPVGPPAPVEKEGPKPEEQNSHAVAKKPEKKREKTPAPENEPPKK
AGGVSPETEKESGPLKRKVGESSTLDKDPPKPAEKAAETCSRQQAHKEMPEKQEEKTPMA
ASGKQAEAAKSSTSETPRKPEEKLAAETPKSPEGRLMKAVKELEKEPMGPVLPPSPPPEE
TESGHPPTPPLSAPDTDRERGRRSREGASPSSSSSSSSSSSSSSSNSSSSASSSRSSSSS
RSRSPSSDRRSVSPQHDSLSRDSGAFCQPEGSPDSGRPDDPPAPRHHERRKRRAERENER
EEEEGEHEERAGTSQSKKPCLTAERRGIADEKEWRRAGEGESRAKHTASELKQDHVPAVM
ESERRAEAEVSAGGQSESHSEHRDERGNKGRAEEGMQPKTFTSRKISVLSANKFLPAVST
SEPAGGSAAAAVPAEGAGGGEADGSQIGRKRRWGSSTAGTAKKPSISITTESLKSLIPDM
KPVSVAGQEAVLDLHPDEGRLSGEENERGEGREEPGQQDRGLKICRTVTQVVPAEAQENG
QKETHKEGGKEHSRCEGERLEPQSITMETQPPVTGETDVKKATPSGTLVRRSINQQKSGV
SVTIDDPVRTTQHPSPPRGKTTNIVHVSNLVRPFTLGQLKELLNRTGTLVDEGFWIDKIK
SHCYVTYSLTEEAVATRNALHGVKWPQSNPKFLSVEFSEQDELNFHKGLVADPGPAEGPR
QSDNSLHRSSNVAPPSSGPPQTHPSERAVRDQWAEREREMERRERTRAEREWDRDKVRDY
NSKHHGGARGPHAGSEGPGRVGHRSRSRSRDRRRKERAKSKEKTADKEKAPEEPPAKLLD
DLFCKTKAAPCIYWLPLTDKQVVLKEEERAERMKERIKRRKEQEEEEKRRDEERRERLKE
REKEVAERERVRELEKRREQRRGGVGGGGERGGGRGGSNKGTRSRSQSTPPPRDRRR
NT seq
5934 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggaggacgtctcgttggacgggaagccgcttcactcgctgcgggttgcg
gacctcagggccgccctggagcagcgagggctcccgaagagcggccagaagaacgcgctc
gtcaagcggctcaagggggcgctcatgttggagaatctgcagaagcactcaacccctcac
tctggtttgcagcccaactcgcagatcggcgaggagatgagtcagaacagcttcatcaag
cagtacctggccaaacagcaggagctcctgaggcagcggctggaaaggaaggcgcgggag
gcggccgaggctgaggagacggacagcacttccgtacaggaagaagagtcgcctcaggag
gataagtcagagggctacgacagcgtatcctgtcaagcagaccaggaggaaagcctcgct
gcctccctccctaaatgcaaggcagtgccagccagggcttcctcttcccctcagtcccag
cgccgctccagtaccagaacggtcagacagagcccggcccggccacaaccagcagaattg
gacagcgaaaatctgctgtgtcctgttactgcttattccccagtcccagaactgcagact
gcagaacctgcccggaccagacggtcgaggcactccagagacgacttctccctggatccc
agcagctccccagtcccggacaggactgcagacggagcagagcagtctcccagagagtcc
agagcaagacggtcatcttttagggagagcaaggactccttggctgctcccagcactgtg
tcggtcgtggcacctccaccaccagcacaacagaccggtcatgctgatctggtagtccgt
gctgaagcccagtcgcctggccccagagctgtggcttcgctgtctgtgcgggtggtaggt
ggaagcactaaaatcagtgggagctctgttgtgatgtcaggtgttagtggaggagttgat
ggagaaatcagaggtgctcctcccacttacgtcaaaccccaacaacaggagtcagctgaa
atgggcaaagatgtcatgttgactgagggagctagcggggtagaggtggtaggaggtggg
gaagagaaagcggcccccaaagaaagtcgcctggccacgaccatgaaagacaacgacgac
gatgaagataaaggacgagatgaagagcttaatctgactttggaaaagagaaaaagcatg
cctgaagtcgtggctgtgggaagcgtgcaagggtcaatcctgaagcatgcctctgtagaa
aagaccaaggctaaattagatctgtctgcaggtagctcgctaatgttggcaaaagccgaa
gaagacccagaagctcccagaggaaggcctagagaggtcctgggaaagggagggatcatg
gaaactggttttacagagaccctagaaaagtctaaggcaaaggaatcttccggggcacca
ctgaaagtggaagaggcacagaaaacactggaaatgcttggtaaacctgccgaggtctcc
aaaccagtagcttcagaaattttaggattggggcagaccagcaggtctactgagaggaaa
gagggtgaacttcccgaaaaagcaaaactcatttcaataacaagtccagaagggcattgg
aagagttctccagcagtattgagagcggttggagggagcgtaccaatgagcgtcgaaccg
aaactggctttagagatgtcaaaagaggttgattctgtgaccgataataaaccagttcag
gattctacagctgcaccagtggagaaaacagttgctgagacatttgtgagcgccacgaaa
cagagagagactgaaaaaaatgaaaaagcagacgctgttttgctacattattcttcagca
tctgtggaacaggcagcacagattgataagcctgaagagggtgcctcagaaaagatcacc
aagcaggccactagagaaaaagaaatagagattgacaaacgtaaagatcccaaagaggtt
tctacagcaaagacaacagacaaacaggagctggacacgcaggcattcaagcctaaagag
gtttctggagagagtagccaggcgtccgagaaaggtgcagtcaaacaacgtaaagaagtt
cctgctgtgccggaaaacctccctttcaatctgaaactgcagacagcaatgccgcagaaa
gaccctgcaattcctaaacagggtcctcacaaaggcgctgcttccgaagaagctgaagca
acagtaaaagttacaactgaagaggtgtttcagccgggtaaaacggagggcgtccagatt
ctcaaactggacagggtcctgcagcctgaaaagggagtcggggagatgacaggagtgcca
gagcaggccagggctatccagagccaccttccgttgtcaaaacggggcagggatttgggc
acatcggataagaaacaagaggagaccgacatcaaaatgcctgccactgaaatggagagt
tctctaaaagcagcgcatcctgaaaagctagcagggggggaggacagttcaaagatttct
caaactccacttaaggaagtcccagcgctacacaaactggcacaagagacttgtagattc
tctgaaaacctgactgtggggagcccggctcctgaacccgaatctgtggaggttacagca
gaagttttatcacaaaagcaaaaggagactttggttattcccacacagactccactgaca
ctacaggttcaatcctctcccaagaatttcagagtctttcgagacacccctccttctcca
gaggctggggcaccacccaaaaagatacaggtcttcgaggatgggctgccggctccggag
caccccaagaaaagctttcagacctgtgggttcgccgaaagaagcatccctgaaccaaaa
cctgagaaagcacctctggtgcagcaggagacggagaggctggctagcctggaacaagct
tcagaggctgggcagttgccaaaggagtctgggtacgctacttccagagaggaaggaccg
agagatgccacaaaggttacggaaacgtggaaggaaggggaggtgagcacgactgcagaa
atgagcccttcagaccccaaaccagggtcagaaagcgtgtccctcaaaccagtaggcccc
ccagcgccagtggagaaagaagggccgaagccagaagagcagaattcacatgctgttgcc
aaaaagcctgaaaagaaaagggagaagaccccggcacctgaaaacgaacctccgaaaaaa
gcaggaggagtttcccctgagacggaaaaggagagcggccctctcaaaagaaaagtaggt
gagagctccaccctggacaaagacccccccaagccagcagaaaaagcagcagaaacttgc
agcaggcagcaggcacataaagagatgcctgaaaaacaggaagagaagacccccatggca
gcttcagggaaacaggcagaagccgctaaatcatcaacctccgagacacccaggaagcca
gaagaaaagctcgcggcagagacgcccaaatctccagaggggcggctgatgaaagctgtg
aaggagttggagaaggagccgatgggccccgtcctgccaccctctcctccccccgaggaa
acggagagcggccacccgccgacaccacccctctcagcccctgacacggacagggagaga
gggaggcggagcagggagggcgcctctccttcctcttcatcatcatcatcatcatcatca
tcatcttcctcctcaaactcctcgtcttcggcctcttcctcccgttcgtcgtcgtcttcc
aggtcgaggtccccctcaagtgacaggaggtctgtaagcccccagcatgactctctgtcc
agagacagcggtgctttctgccagcctgaggggtcccccgattcaggacgccccgacgac
ccccccgcaccccgacaccacgagcggcgcaagagacgagcggagagagagaatgaaaga
gaggaggaggaaggggagcatgaggagagagccgggaccagccaaagcaagaagccttgc
ttgacagcggagagaaggggcattgcggatgaaaaggaatggagaagagctggggaagga
gagagcagggctaaacacacagctagtgagctgaagcaggaccacgtgcctgctgtgatg
gagtcagagagacgcgccgaggcagaagtctctgcaggtggccagtctgagagccattct
gagcacagggatgaaagggggaacaagggccgagcagaggagggcatgcaacccaaaaca
tttacatccaggaagatctcggtcttgtcagccaataagtttcttcctgcagtttccacc
agcgagccagcagggggcagtgcagcagcagcagtcccagctgagggagcaggtggaggg
gaagcagacgggagccagataggaaggaagaggcgctggggttccagcaccgctggcact
gccaagaaaccttccatcagcatcacaacagaatcgctcaagagcctgattcctgatatg
aagccagtgtctgtggcaggccaggaggccgtcttggatctgcaccctgacgaagggcgc
ctgtctggggaggagaatgagaggggagagggtagagaggaacccgggcagcaggacagg
ggactcaaaatctgcaggactgtcacacaggtggtacctgcagaagcccaggagaatgga
cagaaggaaactcacaaggagggaggaaaggagcattccaggtgtgagggagagaggctg
gaaccccagagcataaccatggagactcagccgccagtcaccggggaaactgacgtcaag
aaagcaacacctagtggcactctagtgcggcgctccatcaaccaacagaagagtggggtg
tctgtcaccatcgacgacccggtccgcaccacccagcacccctcccctccccgtggcaaa
accaccaacatcgtgcacgtctcaaacctggtcagaccattcacactgggccagttgaaa
gagctactgaacagaaccggtaccctggtggatgaaggattctggatcgataagataaaa
tctcactgctatgtaacgtattctttgacggaagaggccgtggccacgaggaatgcgctg
catggggtcaagtggccgcagtccaaccccaaattcctttcggtggaattttcagagcaa
gatgagctcaacttccacaaaggcctggtggcagaccccgggccagcagagggccccaga
cagtcggacaattctctccatcgctcttccaacgttgcccccccctcctccgggcccccg
cagactcacccctcggaaagggccgtgagggaccagtgggcggagagggagcgggagatg
gagaggcgcgagaggaccagggcggagagggagtgggacagggacaaggtgcgggattac
aacagcaagcaccatgggggcgctagggggccacacgcaggatccgaggggccagggaga
gtcggccacaggtccaggtctcgatcccgggacaggaggcgcaaagagcgagccaagtcc
aaagagaagacggcagacaaagaaaaagccccagaggagcctccagctaaactcctggac
gacctcttctgcaaaaccaaagcggcgccctgcatctactggctccctctaacagacaag
caggtggtgctgaaagaggaggagcgtgcggaaaggatgaaagagcgaatcaagcgccgc
aaagagcaggaagaggaggagaagaggagggatgaggagaggagggagaggcttaaggag
cgagagaaagaggtggcggagagggagcgagtgagggagctggagaagaggagagaacaa
aggagagggggagtgggaggaggaggggagcggggtggagggagagggggcagcaacaag
ggaacacgaagccggagtcagagcactccaccgcccagagaccgaaggcgctga
DBGET
integrated database retrieval system
