Polyodon spathula (Mississippi paddlefish): 121305260
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Entry
121305260 CDS
T07273
Name
(RefSeq) LIM domain-containing protein ajuba-like isoform X1
KO
K16682
LIM domain-containing protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121305260
03036 Chromosome and associated proteins [BR:
pspa03036
]
121305260
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121305260
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
121305260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
Motif
Other DBs
NCBI-GeneID:
121305260
NCBI-ProteinID:
XP_041092755
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Position
42:complement(1740719..1759814)
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AA seq
758 aa
AA seq
DB search
MDRLGSKLLEKLKLTDSGSVKFNRKKDDSCNHAQNTANAKPASKTERGPPASTQEELPGL
NRGTTGVYQQLVPGNAQPAPAASLEACSGTGLRCSLRRPPLTRDSPSVDANTGEYAVVEY
GRGAAIDPPRGYLLEARHSAGLQLADSNIGKDFSVQDNEFERLSCRRRYSLEIQQLMQQQ
QQHLAGLNHRFSGSEFYESPTPIGERPKRLSLQESPTKRFSSGSDFSDRHSFLSPPQSRL
DPGPIPSYYPPPYNNAGSGSNPGLSPRSSYSLYESILTSPRSSFASTASGGDSRTSVNFE
SCSSSNRTSGISMGYDSRYGFGGSSTESPQLSAGLQQLHLGCQFYHSPRSSMVVAAAAAG
ASARGGSSVNYNPPACWGADFEVGAAFRHQQRGLYHVGSPDNRHSYPPALGSPAAASFFE
RDMARRSVTGYPQEQARSSAGARYQEELAYLLSRERWLKEHAIKGASVSGTLAQEAQVPT
DIPAGAQNTHSAPPAAAQASKQQGALVHQVSSARVSHTLTRPQEQPTRGQPGREPGESKE
EYFGTCMKCNKRVYGADNACQALDSLFHTRCFVCSSCGRTLRGKAFYNVNGSVYCEEDYM
VKTAKPDLSFSGFQEAAEKCCVCGHLILEKILQALGNSYHPGCFRCVICNKALDGVPFTV
DFSNKVYCVTDYHRIFAPKCSSCGQPILPAGGSEEIFRVVSMNKDYHFECYHCEDCGMQL
SDKEGQQCFPLEGHLLCHCCHLRRASVQPQTPSLGYNH
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtttgggaagcaaacttcttgaaaagttaaaactgaccgactctggcagcgtt
aaattcaatagaaagaaagacgactcttgtaatcatgcgcaaaacacggccaacgccaaa
ccggccagtaaaacagagaggggacccccagcgtctactcaggaggaactgcccggcttg
aacagagggaccaccggtgtgtatcagcaactcgtcccgggcaatgcgcagccggcccct
gcggcttcacttgaggcctgctcgggaaccggtctccggtgctccctgaggcggccgcct
ctgacccgggacagccccagtgtggatgctaacactggggagtatgcagtggttgaatac
ggccgtggagcggccattgacccaccaaggggttacttgctggaagcacgacacagcgcc
ggtttgcaactagcagactctaacattgggaaggacttcagtgtccaggacaatgagttt
gagcggttgagctgcaggcggcgctattctctggaaatccagcagctgatgcagcagcag
cagcagcacttagcaggtttgaatcaccgtttcagtggcagcgagttttatgagtcgccc
acacccattggggagcgacccaagcggctctccttgcaggagtctccaacgaaacgcttc
agcagtggcagcgacttttcggacaggcacagctttttatccccgccgcagtcgcggcta
gaccccggcccaattccaagttattaccccccaccttacaacaacgctgggagcggcagc
aacccgggcttgagtccccgttcctcttacagtctctacgagtccatactgaccagtccg
cgatccagctttgccagcacggccagcgggggggactcccggacaagtgtcaacttcgag
agctgttcgagcagcaaccggaccagcggcatcagcatgggctacgactcgaggtacggc
ttcgggggatcgagcacggagagcccgcagttaagtgccggcctgcaacaactgcatctg
ggttgtcagttctaccacagcccgcgctccagcatggtcgtcgcagcagcagcagcaggg
gcgagcgcccgaggcgggtcgtcagttaattacaacccaccggcatgttggggagcagac
tttgaggtcggagccgcttttaggcaccagcaacgggggctgtatcatgtgggaagcccg
gataatcgtcactcataccctcctgctcttggtagtccagcggcggcaagtttcttcgaa
agggacatggctcgccgctccgttaccggttaccctcaagagcaagcccgcagctcagcc
ggggcccgttaccaagaagagctggcgtacctgctgagtcgagagcgctggttaaaggaa
cacgccatcaagggcgcctctgttagtgggactctggctcaagaagcacaggtgcccact
gatattccagccggagcccagaatacccacagtgccccccctgctgctgcacaggccagc
aagcaacagggcgctctcgtccaccaggtcagttccgcccgggtgagccacactctcacc
cggccccaggagcaaccgacgcggggtcagccaggacgagagccgggggagtcgaaagag
gaatatttcgggacgtgtatgaagtgtaacaagcgggtgtacggagcagacaatgcctgt
caagcgctggacagtttatttcacacgcggtgtttcgtctgcagctcctgtggcaggaca
ttacgagggaaagccttctacaatgtgaacgggtcagtctattgcgaagaggattacatg
gtaaaaacagcaaagcctgacctctctttctctggattccaggaagctgctgagaagtgc
tgtgtgtgtgggcatctcattctagaaaagattttacaggctctggggaacagctatcac
cctggctgtttccgctgtgtcatctgcaacaaagccctcgatggcgttcctttcactgtg
gacttctccaacaaggtgtactgtgtcactgactaccacaggatattcgcaccaaaatgt
tcctcctgcggtcagcctattctacctgcagggggctcggaggaaatattcagagtggtc
tccatgaataaagattaccacttcgagtgctaccactgtgaggactgtgggatgcagctg
agcgataaggaaggtcaacagtgcttcccattggagggacacctgctgtgtcactgctgt
cacctgaggagagccagcgtgcagccacaaacaccttccctcggctacaaccactga
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