Polyodon spathula (Mississippi paddlefish): 121305547
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Entry
121305547 CDS
T07273
Name
(RefSeq) TBC1 domain family member 25-like isoform X1
KO
K24799
TBC1 domain family member 25
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121305547
Membrane trafficking [BR:
pspa04131
]
Others
Specific organelles associated proteins
Auto phagosome
121305547
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
FERM_N
Motif
Other DBs
NCBI-GeneID:
121305547
NCBI-ProteinID:
XP_041093143
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All DBs
Position
43:complement(1851865..1860338)
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AA seq
1147 aa
AA seq
DB search
MLLTFTDVHCPVTLYHGEMSRMYKVVSSHTHTHTHSQPILHELHILTLLSLCLQKCEGFQ
QSEFRSFAVDPQITSLDVLQHIMIRAFDLNEKRNFGISYLSRDRQGVELYLSLLSDWDLD
AAFLSASKPYLQLKIDTKPAEDSPLLEDWDIISPKDVIGTDLLPGERKSLAAAALPFTQS
LLSQVGRTLSRVQQALSWSDGEDVKPFKPPLSDTEFHSYLNHQGQLTRPEDLRLRIYHGG
VEPSLRKVVWRYLLNVYPDGLTGQERMDYMKRKTREYEQLKGEWSQRASPEDLEFIRGNV
LKDVLRTDRTHPYYAGSEDSPHLTALTSLLTTYAITHPQVLYCQGMSDLASPILAVMDNE
AHAFICFCGLMKRLEGNFRADGNLMSLKFQHLKLLLRHSDPEFSAYLVSRGADDLFFCYR
WLLLELKREFAFEDALRMLEVTWSSLPPDPPETEVELLGLTLEEGEREERRERHMVRPTV
QVEGEEREGIRERRERHMLSSTPQDEGEGEVDSEESKEKHVQRPTAHGEGEEKKSGETSD
GDERENTGEERMERGKDENGEEWRKEHLFRPADQGDRDDDRWDRRERNDRVMLRPITPVE
GEESEREEKAGKPRLSPVSQREREEGEGEREELETREREGDKTEREERKEGKSTGDSRER
MLRPYQDEEERERQRKGESELVEKERRHMERPSTQSEGEEEGRCEAKPNTQEGREEKETG
VRVEIEARVTERREGLREVREQGGDPKENPFEDAEKAGNVGSEEHKPNLKENPSAELDWG
IPRHIEDSFMVRGEGGRQASSREGLLTEEQNKTQGEGEGGHSVLPLPPLGKQPSFGEYKY
YSAWNESFDLEEKTNLKDLDNVINLINVLNSRVDESSQTRSPSVLSRHPTEESEGELGEG
EREPLLKLPNQPPISHPLPASNLSRKMTPPSGRVGSPSLPNGKPASPLLANGKAGSPCLC
GDKERGERPVSPCLPNWRTASFSLPSRKSPSGATGRRNSTYSPPSSSPCLSSRLLSPSLP
NKTSTPATPESQAWGVAQKEDKQQQQQQPPLSLPPPQEFGKGNPFMLFLCLSILLEHRDH
IVKNGLDYNELAMHFDRLVRKHNLNRVLHRAKALFADYLHSEVWDSEEGDEASSDSPAAQ
SPKQPFS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgttactcacgttcacagacgttcactgtcctgtaacattgtaccatggggagatgtca
cgcatgtacaaagttgtgtcttcacacacacacacacacacacacagccagcccattctt
catgaactccatatattgactctcttgagtctttgtcttcagaagtgtgaagggttccag
cagtctgagttccgctccttcgcagtggacccacagatcacttcactggacgtcctgcag
cacatcatgatcagagccttcgacctcaatgagaagaggaattttgggatcagctacctg
tcccgggacaggcagggtgtggagctgtacctgtctctgctctcggactgggacctggac
gcagcctttctcagtgcctccaaaccctacctgcagctgaagatcgacaccaagccagcc
gaggacagccccctgctggaggactgggatatcatcagcccaaaggatgtgatcggtacg
gatctcctgccaggagagaggaagtctttggctgctgctgctttgcccttcacacaatcc
cttctctcccaggttggcaggaccctttcccgggtgcagcaggctctcagctggtccgat
ggggaggatgtgaagcccttcaagccaccactgagcgacacagagttccacagctacctg
aaccaccagggtcagctgactcgaccggaggatctgagactgaggatctaccacgggggt
gtggagccctccctccgcaaggtggtgtggcgctacctgctgaacgtgtaccctgatggt
ctgacgggtcaggagcgcatggactacatgaagaggaagacgcgggagtacgagcagctg
aagggggagtggagccagcgggccagccctgaggacctggagttcatccgggggaacgtg
ctgaaagacgtgctgagaaccgaccgcacgcacccctactatgcagggtccgaggacagc
ccccacctcaccgcgctgaccagcctgctcaccacctacgccatcactcacccgcaggtc
ttgtactgccagggtatgagtgacctggcctcccccatcctggctgtcatggataacgag
gcccacgccttcatctgcttctgcgggctcatgaagcgcctggaggggaacttccgggcg
gatggcaaccttatgtccctcaaattccagcacctgaagctgctgctgcgccactccgac
ccagagttctctgcctacctggtgtcccgcggcgcagacgatctcttcttctgctaccgc
tggctgctgctcgagctgaagagggagtttgcctttgaggacgccctgaggatgctggag
gtcacctggagctccctgccccctgaccctccggagaccgaggtggagctgctggggctt
accttggaggagggggagagggaggaaaggagggagaggcacatggtaaggcccactgtc
caggttgagggagaggagagggaaggaattagagagaggagggagaggcacatgcttagt
tctaccccccaggacgagggtgagggggaggtggacagcgaagagagcaaggagaagcac
gtgcaaaggcccaccgcccatggtgaaggagaggagaagaaaagtggggagacgagtgac
ggagatgagagggagaacacaggggaggagaggatggagagaggcaaagatgagaacggg
gaagaatggagaaaggagcacttgtttagacctgctgaccagggtgatagggatgatgat
aggtgggacaggagggagaggaatgacagggtcatgttaagacccatcaccccagttgag
ggagaggagagtgagagggaagagaaagcagggaagcccaggctaagtccagtctcccag
cgtgagagagaggagggggaaggagagagggaggagctggagacaagagagagagaagga
gataagacggaaagagaggagaggaaagaagggaagagtacaggagatagtagggagagg
atgctgagaccataccaggatgaagaagaaagggaaagacaaagaaagggtgagagtgag
ttagtggagaaagaaaggaggcacatggagagacccagcacccaaagtgaaggggaggaa
gaaggaaggtgtgaggcgaaacccaacacccaggaggggagagaggaaaaggagactggg
gtgagggtagagatagaagcaagagtgacagagaggagagagggactgagggaggtgaga
gagcagggaggggatcctaaagaaaatccttttgaggatgctgagaaggctggaaatgta
gggagtgaagaacacaaaccaaatctaaaagagaatccatcagcagaactggattgggga
ataccgaggcacatagaggattctttcatggtgagaggagagggaggaaggcaagcatcc
agcagggaaggattacttacagaagaacagaacaaaacacagggagagggagaggggggg
cacagtgtcctgccacttccacccctaggaaaacaacccagtttcggggagtataaatac
tacagcgcttggaacgagagttttgaccttgaggaaaaaacaaacttgaaagatctggac
aatgtgatcaatttgataaacgttttaaacagcagagtggatgagagtagccaaactcgt
agcccctctgtcctctcccgccaccccactgaggaaagcgagggagagctgggagaaggg
gagagagaacctctccttaaactgccaaatcaaccacccatctcccaccccctcccggcc
agcaacctctccaggaaaatgacgccacccagtggcagggtgggctctccatctctaccc
aatgggaagccggcctcccctttgctggctaatgggaaggcaggatctccttgcctctgc
ggcgacaaggaaagaggagagcgcccagtctctccctgcctacccaactggcgcactgca
tcgttctcgttgcccagtaggaagtccccatctggggcgactgggcgtcgtaactccact
tactctcccccttcttcctctccatgcctgtccagcagactactgtccccctccctcccc
aacaagacaagcacccctgctaccccggagagccaggcttggggtgtcgcacagaaagaa
gacaagcagcagcagcagcagcagcccccactttccctgccgcccccccaggaatttggc
aaagggaacccattcatgcttttcctgtgcctgtccatcctcctggagcacagggaccac
atagtgaagaacgggctggattacaacgagctggccatgcatttcgacaggctggtccgc
aaacacaacctgaacagagttctgcaccgtgccaaggctctgtttgcagattacctgcac
agcgaggtctgggactcggaggaaggggacgaggccagctctgattccccggcagcccag
agcccgaagcagcctttctcctga
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