Polyodon spathula (Mississippi paddlefish): 121305686
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Entry
121305686 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03020
RNA polymerase
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121305686
09124 Replication and repair
03420 Nucleotide excision repair
121305686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121305686
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121305686
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121305686
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121305686
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121305686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RNA_pol_Rpb1_7
CdiA_C
Motif
Other DBs
NCBI-GeneID:
121305686
NCBI-ProteinID:
XP_041093312
LinkDB
All DBs
Position
44:complement(3370710..3382111)
Genome browser
AA seq
1433 aa
AA seq
DB search
MNSPVCFLPSQVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNA
DFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVF
LERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQVFTLIIPGHINAIRTHSTHPDDED
SGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHLSYLEMGHDTTRLFYSNIQT
VINNWLLIEGHSIGIGDSIADAKTYLDIQSTIKKAKQDVIEVIEKAHNNELEPTPGNTLR
QTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVE
GKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKT
AETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSHK
AFEKKFKFDYTNDRALRRILQEEVVKDVMTNALVQGTLEKEFEQMKEDRDILRAIFPTGD
SKVVLPCNIARMIWNAQKIFRINTRTPTDLNPLRVVEGVKELSKKLVIVNGDDPLSRQAQ
QNATLLFNIHLRSTLCSRRMTEEFRLSTEAYDWLLGEIEAKFNQSIAHPGEMVGALAAQS
LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERA
KDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRI
ELDRKHMTDRKLTMEQIAEQISKVYMHLPQTDNKKKIIITEEGEFKALQEWILETDGVGL
MRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCD
TMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVRLXGVSENIMLGQLAPAGTGCFDLLLD
AEKCKYGMEIPTNIPGISVAGPSGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSIG
ESNNPNIKSTSNILSSILKSLYLVSEMHFFLPPGGAMSPSYSPTSPAYEPRSPGGYTPQS
PGYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPWLRGSPTSPNYTPTSPSGTRPMSPSYSPPLWGYTPTSPNYSPTSPWGWGSPRY
SPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTS
PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPASPGYTPTSPKYSPTSPTYS
PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgaattctcctgtctgtttcctcccttcccaggtcgagaggcacatgtgtgacggtgac
atcatcatcttcaacagacagcccacactgcacaagatgtctatgatgggacacagggtt
cggatcctgccgtggtcgacgttccggctcaatctgagcgtgacgaccccctacaacgcg
gatttcgacggggacgagatgaacctgcacctgccccagtccctggagacccgcgcggag
atccaggagctggccatggtgcccaggatgatcgtcacgccccagtccaaccgtcccgtc
atgggcatcgtgcaggacaccctgaccgccgtgcgcaagtttactaagagggacgtcttt
ctggagcggggggaggtgatgaatcttctcatgttcctctccacctgggacgggaaggtt
cctcagccagccatcctgaagccgcggccgctgtggaccgggaagcaggtcttcaccctc
atcattccaggacacatcaacgccatccgtacccacagcacccaccccgacgacgaggac
agcggcccctacaagcacatctcccccggagacaccaaggtgatcgtggagaacggtgag
ctgataatgggcatcttgtgtaagaagtctctgggcacctcggccggctctctggtgcat
ctctcctacctagagatgggacacgacaccaccaggctgttctacagcaacatccagact
gtcatcaacaactggctgctcatcgagggtcactctatcggtattggagactccattgct
gatgccaagacctacctggatatccagagcaccatcaagaaagccaagcaggatgtgata
gaggtcatagagaaggctcataataatgagctggagcccacgcctggaaacacactgagg
cagaccttcgagaaccaggtgaacaggatcctgaacgacgcccgtgacaagactggctcc
tctgcacagaaatccctgtccgagtacaacaacttcaaatccatggtggtggccgggtcc
aagggttccaagattaacatctcccaggtcatcgccgtggtggggcagcagaacgtggag
gggaagcgcatcccgttcggcttcaagcaccgcaccctgccgcacttcataaaggacgac
tacgggccggagagccgcggcttcgtggagaactcgtacctcgccggcctcacccccaca
gagttcttcttccatgccatgggagggagagaggggctgatcgacaccgccgtcaagact
gcagagacaggctacatccagcggcggctgatcaaatccatggagtctgtgatggtgaag
tacgacgcgactgtgcgcaactccatcaaccaggtggtgcagctgcgctacggggaggac
gggctggcgggagagtccgtagagttccagaacctggccaccctcaagccctcgcacaag
gccttcgagaagaagttcaagttcgactacaccaacgaccgtgctctgcggcgcatcctg
caggaggaggtggtgaaggacgtgatgaccaacgccctcgtgcagggcaccctggagaag
gagtttgagcagatgaaggaggacagagacatcctcagagccatcttcccaacgggggac
agcaaggtggtgctgccgtgcaacatcgccaggatgatctggaatgcacagaagatcttc
cgcatcaacaccagaaccccgaccgacctgaacccactcagagtggtggaaggtgtgaag
gagctcagtaagaagctggtgatcgtgaacggggacgaccccctgagcagacaggctcag
cagaacgccacactgctcttcaacatccacctgcgttccacgctgtgcagccgccgcatg
actgaggaattccggctcagcacggaggcctacgactggctcctgggcgagatcgaggcc
aagttcaaccagtctatcgctcaccccggtgagatggtgggcgctctggccgctcagtct
ctcggagagcccgccactcagatgactctgaacaccttccactacgccggcgtgtcggcc
aagaacgtgaccctgggtgtgccgcgtctcaaggagctgatcaacatctccaagcggccc
aagaccccctcgctgaccgtcttcctgctggggcaggcagcgcgagacgctgagagggcc
aaggatatcttgtgccggctggagcacacgaccctgaggaaggtgacggcgaacacggcc
atctactatgacccgaacccccagaacacagtggtgacggaggaccaggagtgggtgaat
gtgtattacgagatgccggacttcgacgtgacccgcatctcgccctggctgctgcgcatc
gagctggaccgcaagcacatgaccgaccgcaagctcaccatggagcagatcgcagagcag
atcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatcattaca
gaggaaggggagttcaaagctctgcaggagtggattctggagacggacggcgtgggattg
atgagggtgctgagcgagaaggacgtggaccccgtgaggaccacctccaacgacatcgtg
gagatcttcactgtgctggggatcgaggctgtgcggaaggccctggagcgcgagctctac
cacgtcatctccttcgacggctcctatgtcaattaccgccacttggcgctgctgtgcgac
accatgacctgccgcggccacttgatggcgatcacgcgccacggcgtgaaccgacaggac
acggggcctctcatgaagtgctccttcgaggaaacggtgaggctanngggggtgtctgag
aacatcatgctggggcagctggctccagccgggacgggctgcttcgatctgctgctggac
gcggagaagtgcaaatacggcatggagatccctaccaacatccctggcatcagcgtggca
ggaccctcgggtatgttctttggctctgctcccagtccgatggggggaatgtccccagcg
atgacaccctggaaccagggagccacgccagcgtatggagcctggtctcccagcatcggt
gagtctaataatccaaacattaaaagcacaagtaatatattaagcagtatattgaaatca
ctgtatctagtaagtgaaatgcatttttttttacctccaggtggcgctatgtctcccagc
tactcccccacctccccagcctatgagccacgctctccagggggctacaccccccagagc
cctggctactcccccacttccccttcctactcccccacctccccttcttactccccgacc
agccccaactatagccccacctctccctcctactcacccacctctccatcctactcccct
acctccccctcctactcgcccacatctcccagctactctccgacttctccctcctactct
cccacctctccttcctactccccgacctccccttcttactctcccacctcgccctcttac
tctcccaccagcccctcttactctcctacatctccctcttactcacccacctctccttcc
tactcccctaccagcccctcttacagccccacctcgccctcgtactctccaacctctcct
agctacagccccacctccccctggctgagggggtcccccaccagccccaactacaccccc
accagtccctctggtactcgcccaatgagcccctcttactccccacctctgtggggctac
accccgacttctcccaactacagccctacctccccttgggggtgggggtcccccaggtac
agccccacctcgccttcctactctccttccagtcctcgttacaccccccagtccccgacc
tacacccccagctctcccagttacagccccagctctcccagttactccccaaccagcccc
aagtacacccccaccagcccttcctacagccccagctccccagaatacacccccacctcc
cccaaatactctcccacctccccaaaatactctcccacttctcccaaatactccccgacc
tctcctacttactcaccgacaactcccaaatacagccccacaagcccgacctactctccc
gcttccccgggctacacccctacctccccaaaatactcccccacgtcccctacctactcc
ccaacgtctcccaaatactccccaacgtcccccacttactccccaaccagtcccaagggc
tccacctactcccccacctccccaggctactcccccacctctcccacctacagcctcacc
agcccggccatcagcccggacgacagcgatgaagagaactag
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integrated database retrieval system
