Polyodon spathula (Mississippi paddlefish): 121305729
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Entry
121305729 CDS
T07273
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121305729
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121305729
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121305729
NCBI-ProteinID:
XP_041093399
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All DBs
Position
44:3102396..3112563
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AA seq
296 aa
AA seq
DB search
MYSMMEHELKSPGPPPSHHPGSGVSPVGSGVGSNHPGAKGACPPGSDPMDKVKRPMNAFM
VWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRALHMKEYPDYK
YKPRRKSKPLLKKDNPAGKYPLSAGNLLAAAAAQGPGGSPRMDSYGWGPTGGYAGMQSEA
LGYPQQLHRYELSTLQYPPGMAPAQSYLSGANSYSPMSYGGGGQQASSVMSMVKPEPVSH
SPTGAPSHHRGGMQGDLRDMISMYIPSNDTTDPAGQRGYSSVQQHYLNGTVPLTHI
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtatgatggaacacgagttaaagtcgccggggcccccgccgtcccatcacccc
ggctccggggtgtcacctgtgggaagcggcgtgggaagtaatcaccccggggcgaagggc
gcttgccctcccggcagcgaccccatggacaaagttaagcggccaatgaacgcctttatg
gtctggtcgcggggacagagacgaaaaatggcccaggagaaccccaaaatgcacaactcg
gagatcagcaaacgactaggagccgagtggaagctactgacagacgcagaaaagcggccc
ttcatagacgaggccaagcgcctcagggcgctgcacatgaaggagtacccagactacaag
tacaagcccaggcgcaagagcaagcctctgttgaagaaggacaacccggctggaaagtac
cccctctcggctggcaacctgcttgcggcggcggcggcgcagggacccggagggagtccc
agaatggacagctacggctggggccccactggggggtacgcgggcatgcagagcgaggcc
cttgggtacccccagcagctacaccgctacgaactgtcgaccctgcagtatccccctggc
atggccccagcgcagagctacctgagcggtgcaaactcatacagccccatgtcttatgga
ggaggcggccagcaggccagctccgtgatgtcaatggtaaaaccagagccggtgtctcac
tcccccactggggcccccagccaccaccgaggggggatgcagggggacctgagagacatg
atcagcatgtacatccccagcaacgacacgacggaccccgcaggacagaggggctacagc
agcgtacagcagcactacctgaacgggactgtgcccctgacacacatctga
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