Polyodon spathula (Mississippi paddlefish): 121305892
Help
Entry
121305892 CDS
T07273
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121305892 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121305892 (ttc37)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121305892 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_19
TPR_11
TPR_16
TPR_17
TPR_12
TPR_14
TPR_CcmH_CycH
ANAPC3
TPR_9
ARM_TT21_C
TPR-S
Fis1_TPR_C
HEAT_Nup120
ARM_TT21_5th
TPR_30
TPR_COPA_B
COG4_N
Motif
Other DBs
NCBI-GeneID:
121305892
NCBI-ProteinID:
XP_041093482
LinkDB
All DBs
Position
2:101927971..101972980
Genome browser
AA seq
1561 aa
AA seq
DB search
MSNKEVKSTLKNAREAIKNKEYKEALKHCKAVLKLEKNNYNAWVFIGVAASELDQPDQAQ
AAYKKAVELEPEQLLAWQGLTNLYEKNNLPGFKEELPDVYRKLLDLYERSDREKWYEVCR
KLVDIYHQERRHLEVARSWYKLISVKQKEAGNEELHQLWRRMVQLLADSQEDQDNETQQL
LITAFENAMSSADKLPGEDHQRLTTEYIKCLSKLPHEEMKMKDACESMLSLYPASTFPLE
VLCMHFIQTGCCSGEAVQYFCKLLEMDSVSGPGHIGLGIKAFQDKKYQEAADNLTQGLKQ
TGSCIQAWYHLAQTQLKMHSYEECIVSCKKALKLSEGEVQWRKLLLRLKTKALVGSSGAS
CAEEAMDTLDQLSDTDKDPELLALKGSAYLQRGLIDQALQVASDLLSSHPNQPEAHSLRG
HIHIKQEEYVQAEQSFQKAIEANPTSGEYYYCLGLVYWHMGEETRRDKTKAHSHLLKAAK
LDVYLGAVFRYLGHYYRDIVQDKGRARGCYKKAFDLDRNDAGSGAAAVDLSMELGDMESA
LAILRTVTEQASAGTAKWAWLRRGLYNLKMNQHSQAIADLQAALRADPKDSICWECLGEA
YLNRRGFTAALKAFTKANELNPESIYSIFQIAAIKQILGKYKEAVTEYMQTIQKRDDYVP
ALKGLGECYLSMARRALNDYLDGRAVDYLEQAIESLFRAVQHRPDLSCLWKLLGDACTTV
HTVSPSRGNVTVWGPLSERNPTSQKQTLNKFEVLSLGGRCYGRALKLMPESANLWCDLGI
NYYRQAQHLMSEGKENETPKLLEKSLQCLKKAVMLDSRNSLYWNVLGVVALCKGIENLAL
AQHSFIKSIQAEANNVLAWTNLGSLYLKNENIELAHEAFKVAQSLEPSYVNCWIGQALIA
EAVGSYETMDLFRHTTELSIHTEGVKGYAHWVCSTLLDKTNRNSELYLYNIVQMNAITAA
QVALSKYTERIRTDAAAFTMLGYLNEHLHLKKQAVAAYQRAVQLLQPTGGKEEVIFALRN
YGRTLCTTGQYDQAIQAYTSTPVTELSDITGLALAYFKKGFLQESARAYEKALSVVTTEK
EKACVLTALAMLEHRQNKVDSAKTLLFKCSMLKEPSVESLQSLCALGLVNRDATLATAAL
NELLKRTDQKEGVHERCLLTCTTFALQGNNVAVQRQASKAIHSNPGDPALWALLSRLVPQ
YHPRVAKGGAVAGRVACHFSMTQGKSALLYSGVNQLAAGMHSGEDQRSNSLKTIQRAALL
CPEDPAVWASLMAACHTENTACYLSSAAPKRAGLEETFMKAISKKVKAEENHPVSYSQCL
ESWALRQAVCGLKQAGQISAAESLCTKVLGVQPEQPGVFLLLRQAQCEQLLQSHRQLPEA
VLVELRKAVMSNYASVSAWHWLAEVYRTQGLMVAAVMCYRQSLQMASQQGDFSGKLASLL
RLALLALAPCMANVSSGEWKDLVQEATSEALKITFCPLAVLLQALLQFSIKMGARETRRL
LERIVYQPGYPETVASVARWYLLRHLHAKHDDELIDALMDNARANGDSRLEDLHKQLCSS
S
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaaagaggtgaagtcaaccttgaaaaatgccagagaggccataaagaacaag
gaatataaggaagccttgaagcattgcaaagctgttctgaagcttgagaagaataattac
aatgcctgggtgtttatcggagtggctgcgtctgagctggatcagcctgatcaggcacag
gctgcgtacaagaaggctgtggagctggagccagagcagctgctggcatggcagggtttg
accaacctgtatgaaaaaaacaacctcccaggattcaaggaagagctgcccgatgtgtac
cggaaactgctggacctgtatgaacgttccgacagggaaaagtggtacgaggtgtgcagg
aaactggtggacatttatcaccaggagagaagacacctggaggtggcaagaagctggtac
aaactgatctcagtaaaacagaaagaggcggggaatgaggagcttcaccagctgtggagg
cggatggtccagctgctggcagacagccaagaggatcaggacaatgagacacagcagctt
ttgatcaccgctttcgaaaatgccatgagttctgcagacaaacttccaggagaagaccat
caaaggcttaccacagaatacattaaatgtttatcaaaactgccacatgaagaaatgaag
atgaaagatgcttgtgaatcaatgctgtctttgtatcctgcctcaacgtttcctctagag
gtcctctgtatgcactttatacagacaggttgctgcagtggagaagctgtccagtatttc
tgtaagctgctggagatggactcagtgagcgggccgggccacatcggactggggatcaaa
gcctttcaggacaagaaataccaagaggctgctgacaaccttactcagggacttaagcaa
acaggttcctgtatacaagcctggtatcacttggcacagacacagctgaaaatgcacagt
tatgaagagtgcattgtttcttgtaagaaagctctgaaactcagtgaaggagaggtccag
tggagaaagctgcttctcagattgaaaaccaaagcgttagtgggaagcagtggagccagt
tgtgctgaggaggcaatggacacccttgatcagctgtcagacacagataaggaccctgag
ctgcttgctttaaaaggcagtgcttatttacagagggggctgattgaccaggcacttcag
gtggcttctgatcttctgtcttcccacccaaatcagccagaggcacactctctcaggggc
catattcacatcaaacaggaagaatatgtccaggcagaacagagtttccagaaagctatt
gaagcaaatcctacctctggagagtattactactgccttggactggtttactggcacatg
ggagaagagaccaggagagacaagaccaaagcacattcccatctactcaaggcagccaag
ctggatgtgtacctaggggcagtgttccgctacctgggtcactactatagagacattgtc
caggacaagggccgagcccgaggctgctacaagaaagcctttgacctggacaggaacgat
gcaggttctggagccgcggctgtggatctcagcatggaactgggagacatggagtctgcc
ctggctatcctgagaacagtgacggagcaggcaagtgcagggacagcaaagtgggcttgg
ctgaggcggggtttgtacaacctgaagatgaaccagcattcccaggcaattgctgatttg
caagccgccctaagggctgacccaaaggattcgatctgttgggagtgtcttggagaagcc
tacctgaatagaagagggttcaccgcagctctgaaggctttcaccaaagcaaacgaactg
aatccagaatccatttacagcatcttccagatagcagccatcaagcaaatcctgggcaaa
tacaaagaggctgtcactgagtacatgcagactatccagaagagagatgactatgtccct
gcacttaaaggtctaggcgagtgctatctttccatggcccgaagagcacttaacgattat
ctggatggaagagctgtggactatctggaacaagccatcgagtcccttttcagagctgtc
cagcaccgtccagacctgtcctgtctgtggaagctgcttggagacgcctgcaccaccgta
cacaccgtatccccctcaaggggaaatgtcacagtctggggccctcttagtgagcgcaac
ccaaccagccaaaaacagaccttgaacaaatttgaagtcctgagtctaggaggacggtgc
tatggccgagctctgaaacttatgccagaatctgctaatctctggtgtgaccttggaata
aactattaccgtcaggcacagcatctcatgtcagaggggaaggagaacgaaacccccaag
ctactggagaaatctttacagtgtctcaaaaaagcagtgatgctggacagtaggaattct
ttgtactggaatgtgcttggagtggttgccttgtgtaaaggtattgaaaacctagctctt
gcccaacactcattcatcaaatcaatacaggctgaagcaaacaatgtattggcttggaca
aacctaggcagtttatatctcaagaatgaaaatattgaactcgctcatgaagcctttaag
gtagcccagtctctggagccttcgtatgttaactgctggatcggtcaggcccttattgcc
gaggcggttggcagctatgaaacaatggatctgttcaggcacaccacagagctcagcatc
catactgaaggtgtgaaaggttatgcccactgggtgtgctccacgctgcttgataaaaca
aacaggaattcagagctttatctgtacaacattgtgcagatgaatgctattactgccgct
caggttgctttgagcaaatacacagagagaatccgcacagatgcagccgctttcaccatg
ctggggtacctgaacgagcacctgcatttaaaaaagcaggctgtggcggcataccagagg
gctgttcagttgctgcagcccacgggaggaaaggaggaggtgatcttcgctttgagaaac
tacggaaggactctgtgcaccacaggtcaatacgatcaggccatccaagcctacacatcc
acgccagtcacagagcttagtgacatcactggacttgcgctggcttacttcaagaagggt
tttttacaggagagtgcaagagcttatgagaaagctttgtcagtggtgacgactgaaaag
gagaaggcttgcgtcctgaccgccttggcgatgctggagcacaggcagaacaaagtggac
agtgccaagactctgctctttaaatgctctatgttgaaggagcccagtgtagaaagcctg
cagtcactgtgcgcactgggcctggtcaatcgagatgctaccctagctaccgcagccctc
aacgagctgctgaagcgtacagaccaaaaagagggggttcacgagcgctgtctcctcacg
tgtaccacattcgccctgcaggggaacaacgtggctgtccaaaggcaggcttccaaagcc
atccatagtaaccctggagatcctgcactttgggctctattatcaagattggttcctcag
taccaccccagagttgctaagggtggagcagttgctggacgagtggcttgccatttcagt
atgacccaaggaaagagtgcactcctgtacagtggggtaaaccagctggccgcgggcatg
cactcaggagaggaccagcgtagtaactcactgaagaccattcagagggcagcattactg
tgtccagaggaccctgctgtgtgggcttctttaatggctgcctgtcacactgaaaacaca
gcgtgctatctgagcagcgcagcaccaaaaagagcaggcttggaggaaacatttatgaag
gcaatctcaaagaaggttaaagcagaggaaaatcatcctgtttcctactcccagtgcctt
gaaagctgggctcttcgacaggcggtgtgtgggctaaagcaggcaggacagatctcagca
gcagaatccctctgcaccaaggttcttggtgtccagccagagcagcccggtgtgttcttg
ctgctcaggcaggcacagtgtgagcagctcctgcagtcacacaggcagctccctgaagct
gtcctggtggagctcagaaaggcagtgatgtctaactacgcatctgtatctgcttggcat
tggctagcagaggtgtacaggactcagggactgatggtggctgcagtgatgtgctacagg
cagagtctgcagatggcctcccagcagggtgatttcagtgggaagctggccagtctgctg
aggctggctcttctggcactcgcaccctgcatggcaaatgtttcaagtggtgagtggaag
gacttggtccaggaagcaaccagtgaagccctgaaaataacattctgtcctctggctgtc
ctgctacaggcactactgcagttcagcattaaaatgggagccagggaaactcgtcgactg
ttggaaagaattgtgtaccagcctggatacccagagacagtcgcttcagttgcccgctgg
tatctcctcagacatctgcatgccaaacatgacgacgaactcattgatgcactgatggac
aacgccagagctaatggagattccagactggaggacctgcataagcagctttgctcttcc
tcttag
DBGET
integrated database retrieval system
