Polyodon spathula (Mississippi paddlefish): 121305922
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Entry
121305922 CDS
T07273
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121305922
04121 Ubiquitin system [BR:
pspa04121
]
121305922
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121305922
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121305922
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
SidD_cat
Motif
Other DBs
NCBI-GeneID:
121305922
NCBI-ProteinID:
XP_041093515
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Position
45:complement(2760848..2777951)
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AA seq
797 aa
AA seq
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MDPPHSEEVSEMETNHISPELPVRWVVSADRTVEIKEEVTELGCDQANERILQEETPPSS
ITERGTDMKRPGLEPELVKGESPVLESAPVKPEAIKLEALSNEGETPSNMYANGKGGAKL
GSIHRKRRISQLEAIQMHPSSQQEPRSSRMHVPPSSAAVRFRMAASNHREKEQPCDVLTS
SHSKEKEDLIPKKCSSSAVWAFFGFKSTDVKQTTILCKKCWNVVPAKGGNTSNLFHHLRH
RHPVEYRKCIEKRSSDKPGKHAAIENLTSVSESVSNVAPYEPDSKRWKQITDAVTYHLAK
DMVPVHTVKQSGFQKLLKVIDKKYQLPSHKYFSETALPALYDDCRERVADELSRVQFFAS
TADLWSSQNAEPYVSLTVHYIGPDWSLRSRCLQTSYFPDDHAGEAIAQGLREALSAWGLS
EERQICITTDSGAKFIKAVQLNAWKRLQCFGHRLHLAIENSVKGNKRIDHAIGVCKKLAS
TFSCSWKKRKALSVAQAELHLPQHQLITETPTHWGSRQEMIQRVLEQEKAIAQVLAADRK
TRHLVLSWQDTDVLQSLTKSLSPLMAFTDVLSGENYVSVSYVKPVLHLLNNNILAVEEDD
TQLAKSIKEKILSYLNLKYSSTDTQDLLDVASLIDPRFKTQYVSEDKLAAVKARVVTEVE
SLLQQDVRFAAGACNAETEPQGVPSKKLKTLGSLFKANPSGPSAPTLVSEKDKILLELNH
YLLSPLADSESDPLIWWKAQQANFPRLCKLAQKYLCIPATSSASERVFSTCGSVVTCKQT
RLKPDAVDRLVFLAKNI
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcctcactcagaggaagtttctgagatggaaacaaatcacatcagcccagag
cttcctgttcgatgggttgtttctgcagacaggactgttgagatcaaggaggaagtgact
gagctggggtgcgaccaggccaatgagcggatcctgcaggaggaaacgccaccttctagc
atcactgagagaggtacggatatgaagcgtcctggactggaacctgaacttgttaaaggg
gagagtcctgtacttgaatcagcccctgttaaaccagaagcaatcaagcttgaggcttta
tcaaatgaaggagagacgccttctaacatgtatgctaatggaaagggtggggctaagctg
ggctccattcataggaaacgtcgcatctcccagctggaggccatccagatgcatccttca
tcacaacaggaaccaaggtcttcccgtatgcacgtcccgccatcgtctgcggccgttcga
ttcaggatggcggcgagtaaccacagagaaaaagagcagccgtgtgacgtgttaacttca
tctcattccaaggagaaagaggatctcataccgaagaaatgctcttcttcagcagtttgg
gctttcttcgggttcaaatcgaccgacgttaagcaaaccaccatactttgtaaaaaatgc
tggaatgtcgtgccggcaaaaggaggcaacacgtcaaacctgtttcatcacctgaggcat
cggcatccagtggagtacagaaaatgcatcgagaagcgatcgtctgacaagcctggtaaa
cacgcggccatcgaaaacctaacctcggtctccgagtccgtttctaacgtcgcgccctac
gagccagacagtaaacggtggaaacaaattaccgatgcagtaacctatcaccttgccaaa
gacatggttcctgtccacactgtaaaacaaagtggctttcaaaagctgttaaaagtcatc
gacaagaaataccagctcccaagtcacaagtatttttcagaaacggctctgccagcgttg
tacgatgactgtcgtgagagagtagctgatgagctgtcccgcgtgcaattctttgcgagt
accgctgacctgtggtcaagccagaacgctgagccgtacgttagcctgactgtacactac
atcggtcctgactggagtttacgcagcaggtgcctacagacgtcatacttcccggacgac
cacgctggtgaagcaatcgcacagggtctgcgagaggcgctctctgcctggggcttgagc
gaagagcggcaaatctgcatcactacggacagcggagcaaaattcatcaaagctgtacaa
ctcaatgcatggaaaagactccagtgttttgggcacaggcttcaccttgctattgaaaac
agcgtgaaaggtaataagcgcatagaccatgccattggtgtgtgcaagaagctggcgagc
accttctcttgcagctggaagaaaagaaaagcactgagtgtagctcaagctgagctccat
cttcctcagcaccagctgataacagaaacaccaacccactggggatcacgccaggaaatg
atccagagagtgctggaacaggaaaaagcaatcgcgcaggtcctagctgctgaccgaaaa
accaggcacctggtgctttcgtggcaggacacggacgtgctccagtcgttgactaagtct
ttgagccctttgatggctttcacagacgttctgtcaggtgaaaactatgtcagtgtctcc
tatgtcaaacccgtcttgcatctgcttaacaacaatattctggctgtggaggaagatgac
actcaactcgcaaagtcaatcaaagagaagattctgagctacctgaacctgaagtattcc
agtacagacacccaggatctgcttgacgttgcctctctgatcgaccctcgattcaaaacg
cagtacgtcagcgaggacaagcttgcagcagtcaaagcaagagtggtgacagaagtggag
tcgctgctccagcaggacgtgcgctttgctgctggagcctgtaacgctgaaaccgaacct
cagggagtaccttctaaaaaactgaagaccttgggcagcctgttcaaggcaaacccgtcc
ggacctagcgcccccacactagtgtctgaaaaagacaaaattttactagagctaaatcat
tatctactttctcctttggctgacagcgagtctgatccattgatctggtggaaagctcaa
caggctaacttcccaagactctgcaaactggcacagaagtatttgtgcataccagcaaca
agttctgcttctgagagagtcttcagcacgtgtggtagcgttgttacatgcaaacagacc
agactgaaaccggatgctgttgacagacttgtgtttttggcaaaaaacatataa
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integrated database retrieval system
