Polyodon spathula (Mississippi paddlefish): 121306001
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Entry
121306001 CDS
T07273
Symbol
pold1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
pspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121306001 (pold1)
03410 Base excision repair
121306001 (pold1)
03420 Nucleotide excision repair
121306001 (pold1)
03430 Mismatch repair
121306001 (pold1)
03440 Homologous recombination
121306001 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121306001 (pold1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121306001 (pold1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121306001 (pold1)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
121306001 (pold1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
121306001 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
121306001 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
121306001
NCBI-ProteinID:
XP_041093669
LinkDB
All DBs
Position
45:1785395..1812382
Genome browser
AA seq
1112 aa
AA seq
DB search
MDSNKRRNAGPPVGGASQPKRPRGGGDWDEDGPSRFEEELALLDESEMGAEFREGQAGHD
VIPVGNLFSTDLNPKWPRPAPPNLNPKTDTLTFQQIELDYYIGSHISGMPGATQGPVPII
RMFGITESGNSVCCHIHGFAPYFYINAPNGFSVSQLAEFKKDLNAVVLRDMRSNKDNISQ
AVLAVDICRKESMYGYHGKRQSDFLRITVATPRLVAPAKRLLEQGFKFGSSAAQSYASYE
ANIDFEIRFMVDCDVVGCNWIXLPALKYRLRGEISAKESGRELPEQDPVSLCQIEVDVGW
TDLISHPPEGEWQKIAPLRVLSFDIECAGRKGVFPEADKDPVIQIANMVQRQGERDPFLR
NVFTLKSCSSIVGSQVLCFDKEAELLKGWAEFIRTVDPDIITGYNIQNFDFPYLLNRAQT
LKVSLFPFLGRIRGVRSVIRDSSFQSKQMGRRENKIINMEGRVQFDLLQVLLRDYKLRSY
TLNAVSFHFLQEQKEDVQHSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLEKLMCVINY
MEMGRVTGVPLSYLLTRGQQIKVVSQLLRQAMKQDLVMPVVKSEGGEDFTGATVIEPVKG
YYAVPIATLDFSSLYPSIMMAHNLCYTTLLQPGAVEKLGLSPDDFIKSPTGDLFVKDSVR
KGLLPEILENLLTARKKAKAELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLP
CLEISQSVTGFGRQMIEKTKQLVESKYTAANGYQADAKVIYGDTDSVMVKLGLETVEETM
KLGREAADWVSSHFTPPIKLEFEKVYFPYLLISKKRYAGLYFSSNPHTHDKMDCKGIETV
RRDNSPLVANLINTCLKRILIDRDPMGAVEHAKEVISDLLCNRVDISELVITKELTRSAE
EYSGRQAHVELAERMRKRDAGSAPNLGDRVPYVIIKATKGVAAYMKSEDPIFVLENNIPI
DSQYYLEQQLSKPLLRIFEPILGETRAESVLLKGDHTRCKTVLTSKVGGLMAFAKKRSTC
IGCRAVLSHDGAVCNYCKVRQSELYQKEITHLSTLEEKFSRLWTQCQRCQGSLHEDVLCT
SRDCPIFYMRKKVQKDLDDQDKLVERFGPPAW
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaacaagagacggaatgccgggccaccagtgggcggagcttcgcagcccaag
cgccccagagggggcggggactgggacgaggacggcccctcccggtttgaggaggagcta
gctctgctggacgaatcggagatgggggcggagtttagggaggggcaggctgggcatgac
gtcataccagtcgggaacctcttctccaccgatctcaaccccaagtggccacgccccgca
cccccgaatctgaaccccaaaactgacaccctgacattccagcaaattgaactggattat
tacataggctctcatatctcaggaatgccgggagctactcagggtcctgtcccgattatc
cgaatgttcggaatcaccgaatccgggaattcggtctgttgtcatattcacggatttgct
ccttacttctacatcaacgcgcccaacggtttctctgtctctcaacttgctgaattcaag
aaagacctcaatgcagttgtcctgagggacatgcgatccaacaaggacaacatttcccaa
gctgtcctcgccgtggacatctgcaggaaagagagtatgtacggttaccatggcaagcgg
caaagcgacttcctgcgcatcaccgtggcgacgccgcgcctcgtcgccccggccaagcgc
ctgctggaacaggggttcaagttcggcagcagcgcggcgcagagctacgcctcctacgaa
gccaacatcgacttcgaaatcaggttcatggtggactgtgatgtcgttggttgtaattgg
attnngctcccagctcttaaatacagactgagaggagagatttcagcaaaggagtccggc
agagagttgccagagcaggaccctgtgtccctgtgtcaaatcgaggtggacgtcggatgg
acagatcttatcagtcacccccccgagggggagtggcaaaaaatcgcccccttgagagtt
ctgagcttcgatatagagtgtgcaggaagaaaaggggtcttccccgaggctgataaggac
cccgtgatccagatcgctaacatggtgcagagacagggcgagagggaccccttcctgaga
aacgtcttcaccctcaagtcctgctccagcatcgtgggctcccaggtgctatgcttcgac
aaggaggcggagctgctcaagggctgggcggagtttattcgcactgtggaccccgatata
atcacagggtacaacatccagaactttgacttcccttacctgttgaacagagcccaaaca
ctgaaggtgtctctgtttcccttcttgggtcgaatccgaggggtcaggtctgtgatcaga
gattcctcttttcagtctaagcagatgggcaggagagagaacaaaattatcaacatggaa
gggagagtgcagttcgatctgttgcaggttctccttcgtgattataaactccgatcctac
accctgaacgccgtcagtttccatttcctgcaggagcagaaggaagacgtccagcactcg
atcatcacagacctgcagaatggtaatgcgcagactcgacgcaggctggctgtctattgt
ctgaaggatgcctacctgcccttgaggctgctggagaagctgatgtgtgtgattaactac
atggagatgggcagagtcacaggagtgcctctgagctacttactgaccaggggccagcag
atcaaagtggtgtcacaactactgagacaggcgatgaagcaggatctggtcatgccggtg
gtgaagtccgaggggggggaagatttcacgggggccaccgtgatcgagccagtcaaaggt
tactatgccgttcccatagcgacgctggatttctcctcgctgtacccgtcaatcatgatg
gcgcataacctgtgctacaccaccctgctgcagccgggggccgtcgagaaactgggtctc
tcccctgatgatttcatcaagtctccgaccggagatctctttgtgaaggattctgtcagg
aaaggtttgcttcctgaaatcctggagaatcttctgacggccagaaagaaggcgaaggct
gaactgaagaaggaaaccgacccgtttaaacagaaagttctggacgggaggcagctggct
ctgaaagtcagcgccaattctgtgtacggcttcactggggcgcaagtgggcaaactgccc
tgcctggagatctcccagagcgtcacggggttcggaaggcagatgattgagaaaacaaaa
cagctggtcgaatccaaatacacagcagccaatggctaccaagcagatgccaaagtcatt
tatggcgacacagactctgtaatggtcaaactgggattggagactgtggaggaaactatg
aaactgggaagagaagctgctgactgggtttccagccactttacaccccccatcaaactg
gagtttgaaaaggtgtattttccctatctgctgatcagtaagaagcgctatgctggtctg
tatttctcctccaatcctcacactcacgataagatggattgtaaaggtattgagacggtc
cgcagagacaacagccccctggtggccaacctgatcaacacctgcctgaaacgcatcctg
attgacagggatccaatgggagcggtggagcacgccaaggaagtgatctcggacctgctg
tgcaaccgggtcgacatctcggagctggtgatcaccaaggagctgacccggtcagcagag
gagtacagcggccggcaggctcacgtggagctggcagagaggatgaggaagagggatgcg
ggcagcgccccgaatttgggggacagggtcccctatgtcatcatcaaagctaccaaagga
gtcgctgcttacatgaagtcagaggacccgatcttcgttctggagaataacatcccaatt
gacagccagtactatctggagcagcagctgtccaaaccgctcctgaggatcttcgaaccc
atcctgggagagacgagagcagagagcgttctcctgaagggggatcacacaagatgtaaa
acagttttaacctctaaagtcggggggctgatggccttcgctaagaagagaagcacctgc
attggctgcagggctgtgctgagtcacgacggtgctgtctgcaattactgcaaagttcgt
cagtctgaactttatcagaaagaaattactcatctcagtacccttgaagagaagttctct
cgcttgtggactcagtgccagcgctgtcagggcagtctccacgaggatgttctgtgtacg
agtcgggactgtcccattttctacatgaggaagaaagttcagaaggatttggacgatcag
gacaaactcgttgagagattcggacccccagcctggtaa
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