Polyodon spathula (Mississippi paddlefish): 121306055
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Entry
121306055 CDS
T07273
Symbol
sox10
Name
(RefSeq) transcription factor SOX-10
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121306055 (sox10)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121306055 (sox10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121306055
NCBI-ProteinID:
XP_041093694
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Position
46:complement(1026222..1038312)
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AA seq
432 aa
AA seq
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MSGEDHSLSETDMSPGASEDGHSLSPGPASSAAGGESPLPGQQDSCEPGHAGGVTVKSEA
DDDRFPIGIREAVSQVLNGYDWTLVPMPVRVSSGNKNKPHVKRPMNAFMVWAQAARRKLA
DQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPEYKYQPRRRKNGKS
GAGSEGDAHSEGEATPSGQPLFKSLHLEHAHSAGAGSPLSDGLHPHPAGQTHSPPTPPTT
PKTELQSGKSSDGKRGERPLGVGGEGGGASGPGKPHLDFGSMDIGEISHEVMSTMEPFDV
NEFDQYLPPNGHSAGQPGGSSYPYGITSALAAAGGHSAAWLSKHHHHHHHHHHSPASSSE
PGKAPVKSESSFAEQPSGSQLTYTSLSLPHYGTAFPALSSRPQFEYSDHQPSTSYYSHGA
QPSGIYSALKSM
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgaggaccacagtttgtcggagacggacatgagccccggggcttcggaagac
ggacactcattgtctccgggtccagcctcaagcgcagccggcggggagtctcctttaccc
gggcagcaggactcctgcgagccggggcatgccggcggcgtcaccgtgaaatcggaagcg
gacgatgaccgctttccaatcgggattagagaagcggtcagccaggtgctgaacggctac
gactggactctggtgcccatgcccgtgcgggtcagctccgggaacaaaaacaaacctcac
gtcaagaggccgatgaatgcgttcatggtttgggcgcaggctgcgcggaggaaactagcc
gaccagtaccctcatctgcacaacgcggagctcagcaagacactggggaagctgtggagg
ctgttgaacgagagtgacaagcgtcccttcatcgaggaggcggagcgactgcgcatgcag
cacaagaaggaccaccccgagtacaagtaccagccacgccgccgcaagaatggcaaatca
ggagccggctctgagggcgacgcccactccgagggcgaggccacacccagcggccaaccg
ctcttcaagagcctgcacctggaacacgcccactccgcgggggcgggctctccgctctct
gacgggctccacccccatccagcaggtcaaacccacagccctcccactccgcccaccacc
cccaagaccgaactccagtccggaaaatcctcggacggcaagcgcggggagcgccccctg
ggggtggggggcgaggggggtggggctagtggaccaggcaaaccccacctggattttggg
agcatggatatcggggagatcagccatgaggtcatgtccaccatggagcccttcgacgtg
aatgagttcgaccagtacctgcctcccaacgggcactccgcggggcagcccggggggtcc
tcgtacccctacgggatcaccagtgccctggcagcggcggggggtcactccgcggcctgg
ctgtccaaacatcaccaccaccaccaccaccaccaccactccccggccagctccagcgag
cccggcaaggctcctgtcaagagcgagtcaagcttcgcagagcagcccagcggctcccag
ctcacctacacctccctcagcctccctcactacgggacagccttcccagccttgtcctcc
cgccctcagtttgagtacagcgaccaccagccatccacctcttactacagccatggagca
cagccctccggcatctactctgccttgaagagtatgtga
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