Polyodon spathula (Mississippi paddlefish): 121306479
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Entry
121306479 CDS
T07273
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03020
RNA polymerase
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121306479
09124 Replication and repair
03420 Nucleotide excision repair
121306479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121306479
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121306479
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121306479
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121306479
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121306479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
121306479
NCBI-ProteinID:
XP_041094134
LinkDB
All DBs
Position
48:complement(1519956..1540351)
Genome browser
AA seq
1078 aa
AA seq
DB search
MRRASVSLHNPAYAPGQCASVSQSAVPWRRRAHALCSDPLLPPAGYIQRRLIKSMESVMV
KYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSHKAFEKKFKFDYTNDRALRRI
LQEEVVKDVMTNALVQGTLEKEFEQMKEDRDILRAIFPTGDSKVVLPCNIARMIWNAQKI
FRINTRTPTDLNPLRVVEGVKELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSRR
MTEEFRLSTEAYDWLLGEIETKFNQSIVSHPGEMVGALAAQSLGEPATQMTLNTFHYAGV
SAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTAN
TAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIA
EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNM
LTDMTLQGIEQISKVYMHLPQTDNKKKIIITEEGEFKALQEWILETDGVGLMRVLSEKDV
DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM
AITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDSMKGVSENIMLGQLAPAGTGCFD
LLLDAEKCKYGMEIPTNIPGISVAGPSGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWS
PSIGSGMTPGGAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPS
YSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPWIRGWVGPSSPSYSPTSPKYTPTSPSYSPSSPE
YTPTSPKYSPTSPKYSPPSPKYSPTSPTYSPTTPKYSPTSPTYSPASPGYTPTSPKYSPT
SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagagccagtgtgagtctccacaaccctgcttatgccccaggtcagtgtgcctca
gtcagccagagtgccgtgccttggaggaggcgtgctcatgccctctgcagtgaccctctt
ctgccccctgcaggctacatccagcggcggctgatcaaatccatggagtctgtgatggtg
aagtacgacgcgactgtgcgcaactccatcaaccaggtggtgcagctgcgctacggggag
gacgggctggcgggagagtccgtcgagttccagaacctggccaccctcaagccctcgcac
aaggccttcgagaagaagttcaagttcgactacaccaacgaccgtgctctgcggcgcatc
ctgcaggaggaggtggtgaaggacgtgatgaccaacgccctcgtgcagggcacccttgag
aaggagtttgagcagatgaaggaggacagagacatcctgagagccatcttcccaacgggg
gacagcaaggtggtgctgccgtgcaacatcgccaggatgatctggaatgcccagaagatc
ttccgcatcaacaccagaaccccgaccgacctgaacccgctcagagtggtggaaggtgtg
aaggagctcagtaagaagctggtgatcgtgaacggggatgaccccctgagcagacaggct
cagcagaacgccacactgctcttcaacatccacctgcgttccacgctgtgcagccgccgc
atgactgaggaattccggctcagcacggaggcctacgactggctcctgggcgagatcgag
accaagttcaaccagtctatcgtgagccaccccggtgagatggtgggcgctctggccgct
cagtctctcggagagcccgccactcagatgactctgaacaccttccactacgccggcgtg
tcggccaagaacgtgaccctgggtgtgccgcgtctcaaggagctgatcaacatctccaag
cggcccaagaccccctcgctgaccgtcttcctgctggggcaggcagcgcgagacgctgag
agggccaaggatatcttgtgccggctggagcacacgaccctgaggaaggtgacagcaaac
acggccatctactacgacccgaacccccagaacacggtggtgacggaggaccaggagtgg
gtgaatgtgtattacgagatgccggacttcgacgtgacccgcatctccccctggctgctg
cgcgttgagctggaccgcaagcacatgaccgaccgcaagctcaccatggagcagatcgca
gagaagatcaacgcaggttttggagacgatctgaactgcatcttcaacgacgacaacgca
gagaaactggtgctgagaatccgcatcatgaacagcgacgagaacaagtttcaggaggac
gaggaagtcgtggacaagatggacgacgacgtgttcctgcgctgcatcgagtccaacatg
ctgacagacatgaccctgcagggcatcgagcagatcagcaaggtgtacatgcacttgccc
cagactgacaacaagaagaagattatcatcacggaggaaggggagttcaaggccctgcag
gagtggattctggagacggatggcgtgggattgatgagggtgctgagcgagaaggacgtg
gaccctgtgaggaccacctccaacgacatcgtggagatcttcactgtgctggggatcgag
gctgtgcggaaggccctggagcgcgagctctaccacgtcatctccttcgacggctcctac
gtcaattaccgccacttggcgctgctgtgcgacaccatgacctgccgtggccacttgatg
gcgatcacgcgccacggcgtgaaccgacaggacacggggcctctcatgaagtgctccttc
gaggaaacggttgatgtcctgatggaagcggctgctcatggggagagtgactcgatgaag
ggggtgtctgagaacatcatgctggggcagctggctccagccgggacgggctgcttcgat
ctgctgctggacgcggagaagtgcaaatatggcatggagatccctaccaacatccctggc
atcagtgtggcaggaccctcgggtatgttctttggctctgctcccagtccgatgggggga
atgtccccagcgatgacaccctggaaccagggagccacaccagcgtatggagcctggtct
cccagcatcggcagtggaatgaccccgggaggggctggattctcccccagcgctgcgtca
gacgccagcggcttcagtcctggctactccccagcctggtcccccacacctggctccccg
gggtccccaggtcctgccagcccctacatcccctccccaggtggcgctatgtctcccagc
tactcccccacctccccggcctacgagccccgctctccagggggctacaccccccagagc
cctggctactctcccacctccccttcctactctcccacctcaccttcttactccccgacc
agccccaactacagccccacctctccttcctactcccctacctccccctcctactcccct
acctccccctcctactctcccacatctcccagctactctcccacctccccttcctactct
cccacctccccttcctactccccgacctcgccctcttactctcccacctcgccctcttac
tctcccaccagcccctcttactcccctacatctccctcttactcgcccacctctccttcc
tactcccctaccagcccctcttacagccccacttccccttcgtactccccaacctctcct
agctacagccccacctccccctggataagggggtgggtgggccccagctctcccagttac
tccccaaccagccccaagtacacccccaccagcccttcctacagccccagctccccagaa
tacacccccacctcccccaaatactctcccacctccccaaaatactcccccccttctccc
aagtactccccaacctctcctacttactccccaacgacgcccaaatacagccccacaagc
ccgacctactctcccgcttccccgggctacacccctacctccccaaaatactcccccacg
tctcctacctactccccaacctctcccaaatactccccaacgtctcccacttactccccg
accagtcccaagggctccacctactcccccacctccccaggctactcccccacctctccc
acctacagcctcaccagcccggccatcagcccggacgacagcgatgaagaaaactag
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