Polyodon spathula (Mississippi paddlefish): 121306562
Help
Entry
121306562 CDS
T07273
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121306562
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121306562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
GP40
Motif
Other DBs
NCBI-GeneID:
121306562
NCBI-ProteinID:
XP_041094290
LinkDB
All DBs
Position
48:complement(816198..822400)
Genome browser
AA seq
295 aa
AA seq
DB search
MYSMMEHELKSPGPPQSHHPGSGVSPVGSGVGSNHPGAKGACPPGSDPMDKVKRPMNAFM
VWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRALHMKEYPDYK
YKPRRKSKPLLKKDNPAGKYPLSAGNLLAAAAAQGPGGSPRMDSYGWGPTGGYAGMQSEA
LGYPQQLHRYELSTLQYPPGMAPAQSYLSANSYSPMSYGGGAQQASSVMSMVKPEPVSHS
PTGAPSHHRGGLQGDLRDMISMYIPSNDTTDPAGQRGYSSVQQHYLNGTVPLTHI
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtatgatggaacatgagttaaagtcgccggggcccccgcagtcccatcacccc
ggctctggggtgtcacctgtgggaagcggcgtgggaagtaatcaccccggggcgaagggc
gcttgccctccaggcagcgaccccatggacaaagttaagcgccctatgaacgcctttatg
gtctggtcgcggggccagcgacgaaaaatggctcaggagaaccccaaaatgcacaactcg
gagatcagcaaacgactaggagccgagtggaagctactgacagacgcagaaaagaggccg
ttcatagacgaggccaagcgcctcagggcgctgcacatgaaggagtacccagactacaag
tacaagcccaggcgcaagagcaagcctctgttgaagaaggacaacccggctggaaagtac
cccctctcggctggcaacctgcttgcggcggcggcggcgcagggacccggagggagtccc
agaatggacagctacggctggggccccactggagggtacgcgggcatgcagagcgaggcc
cttgggtacccccagcagctacaccgctacgaactgtcgaccctgcagtatccccctggc
atggccccagctcagagctacctgagtgcaaactcatacagccccatgtcttacggagga
ggtgcccagcaggccagctctgtgatgtcaatggtaaaaccagagccggtgtctcactcc
cccactggggcccccagccaccaccgaggggggctgcagggggacctgagagacatgatc
agcatgtatatccccagcaacgacacgacggaccctgcaggacagaggggctacagcagc
gtacagcagcactacctgaacgggactgtgcccctgacacacatctga
DBGET
integrated database retrieval system
