Polyodon spathula (Mississippi paddlefish): 121306657
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Entry
121306657 CDS
T07273
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121306657 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121306657 (prpf4)
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121306657 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
121306657
NCBI-ProteinID:
XP_041094404
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All DBs
Position
49:75834..82701
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AA seq
508 aa
AA seq
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MSDDEGAPPMAKKSRIYYGSLEERERERLSKGAGGSLGREAVRAGIDAGNINLASGEAFD
IEDHVSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLR
NILSVVGTDALKKSKKEDEKSKRPQDEFQQTWYHEGPETLKAARLWLARYSLPRAMERLE
EARNLKEVPEASRTARQQERHTTLRGLNNFCSQIGDDRPISFCQFSPNSKLLVTASWSGL
CKLWSVPDCSLIRTLRGHNTNVGAISFHPQATVSLDEKDVNMASCAADGSVKLWSLDSDE
PVADIEGHTARVARVSWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVHDIAFH
PDGSLAGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGLSFSPNGFHVATGSGDHTCKVW
DLRQRKCIYTIPAHQNLLSGVRFQPTDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGK
VMGLDISLDGQLIATCSYDRTFKLWMSD
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaaggcgccccccccatggcgaagaagtctcgtatctattacgggagc
ctggaggagcgcgagcgcgagcggctgagcaagggggctgggggctctctgggcagagag
gcggtccgtgccgggatagacgcagggaacattaacctggccagcggcgaggcgttcgat
attgaagaccacgtcagcgagcggcaagcggaggtgctggcggagttcgagcgcaggaag
cgggcacggcagatcaatgtgtccacggatgacgccgaggtgaaggcgtgtctgcgtgct
cttggggagccaatcacgctgttcggggaggggccggcagagcgcagggagaggctgcgc
aatatcctgtctgtggtcgggacggacgctctgaagaagtctaagaaggaggacgagaag
tcaaagagaccgcaggacgagttccagcagacctggtaccacgagggtcccgagaccctg
aaggctgcccggctctggctggcacgctactcgctgcccagggcgatggagagactggag
gaggccagaaacctaaaggaggttccggaggcgtcgcgcacggcacggcagcaagagagg
cacacgaccctgcggggcctgaataacttctgcagccagattggtgacgaccggcccatc
tctttctgccagttcagccccaactccaagctgctggtcacagcgtcatggagtggactc
tgcaagctgtggtctgttccagattgcagcctgattcgcaccctcagaggtcacaacacc
aacgtgggcgccatttccttccacccccaggccactgtctccctggacgagaaggacgtc
aacatggcttcctgcgccgccgatggctctgtgaagctgtggagtctcgacagtgacgag
cccgtagccgatatcgaggggcacactgccagggtcgccagggtcagctggcacccctcc
ggcaggtttctgggcaccacctgctatgatcactcgtggcgcctctgggacctggaggct
caggaggagattctgcaccaggaggggcacagcaagggggtgcacgacatcgccttccac
cccgacggttcgctggctgggactgggggtctggatgcgttcggccggttgtgggacctg
cgcaccggacgctgcatcatgttcctggagggacacctgaaggagatctacgggctcagc
ttctcccccaacgggttccacgtggccacgggaagtggagaccacacctgcaaggtctgg
gacctgcggcagaggaagtgcatctacacgatccccgcccaccagaacctgctgtctggg
gtcaggtttcagcccactgacggtcacttcttactgaccggcgcctatgacaacaccgcc
aaagtgtggacgcacccgggctggtctccgctgaagacactggccgggcatgagggcaag
gtgatggggctggacatctctctggacgggcagctcatcgccacctgctcctacgaccgc
accttcaagctgtggatgtcagattag
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integrated database retrieval system
