Polyodon spathula (Mississippi paddlefish): 121306674
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Entry
121306674 CDS
T07273
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121306674
04020 Calcium signaling pathway
121306674
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121306674
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121306674
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
121306674
NCBI-ProteinID:
XP_041094438
LinkDB
All DBs
Position
49:428592..500045
Genome browser
AA seq
2293 aa
AA seq
DB search
MAIFGDDLPTRYGGGGPPGAGRGGNRQGGPQVAPRMYKQSMAQRARTMALYNPIPVKQNC
FSVNRSLFIFSEDNIIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPAKDKTPMSA
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGTYLRNGWNVMDFVVVLTGQSSRLQVDLPG
CSNWLPPQCIPGEQTVDYPCGTEPPARTCPVGSECREYWIGPNFGITNFDNILFAVLTVF
QCITMEGWVEILYSANDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEK
RREFLKLRRQQQIERELNGYLEWICKAEEVMLAEEDKNAEEKSPLDVLKRAKTKKSKNDL
IHAEEGEDHFTDITSMGSPFARASLKSGKNESSSYFRRKAKRFRFFIRRMVKAQSFYWAV
LCVVALNTLCVAIVHYDQPQWLTDALYFAEFVFLGLFLTEMTLKMYGLGPRNYFHSSFNC
FDFGVIIGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKS
IISLLFLLFLFIVVFALLGMQLFGGQFNFNEETPTTNFDTFPAAILTVFQILTGEDWNAV
MYHGIESQGGVRKGMLSSIYFIILTLFGNYTLLNVFLAIAVDNLANAQELTKDEEELEEQ
TNQKLALQKAKEVAEVSPMSVTNISIAAFVKQTRGALSCSSSVSSVNSAREQQKAMKLMS
VWEQRTTQIRRHNLQASCEALYNELDPEERMRLSSLLHIRPDMKTHLDRPLVVEPREEVR
NNVGEAAEKSPAQETTDTAPRKHHRHRDKPAEQQQDKTEGSNENGESSGKEGRHRSHHSR
SKEQEGKEGKSERSRSRERGKRHHHQVSVEEGAEKEHRRHRSHRHSAERQAKEGNGTVNN
GKGERRPRHKDGSRSTNKEGEAGTKGENGERPEKRHKHRSKAMSTYEGEEKKEKEGEAGE
KEHKNHWPKQNQAETEPGTLASTPLQAPGSLNPVEEKPEDSDNQKNVKRTMQTMDNTNTV
HIPVTITAPPGETTVIPINNVDFETLAKNEEKKNLEDLTRNGPKQILPYSSMFVFTSSNP
VRRLCHYIVNLRYFEMCILVVIVMSSIALAAEDPVETEAPRNKVLKYLDYVFTGVFTFEM
VIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSSFMGAHQSVARGTKGKDLNTI
KSLRVLRVLRPLKTIKRLPKLKSVFDCVVNSLKNVLNILIVYMLFMLIFAVIAVQLFKGK
FFYCTDESKELEKDCRGQFLDYEKDEVDAQPREWKKYDFHYDNVLWAFLTLFTVSTGEGW
PTVLKHSVDATYEDQGPSPGFRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVM
SECSLEKNERACIDFAMSARPLTRYMPQNKQAFQYKMWKFVVSPPFEYFIMAMIALNTVV
LMMKFHGAPDAYEAMLKYLNIVFTALFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSV
TDILVTEINTTNKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIA
MLFFIYAIIGMQVFGNIALNGETAINHHNNFRTFFQALMLLFRSATGEAWHEIMLSCLSS
RDCDERSGSDGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHH
LDEFIRVWAEYDPAACGRITYLDMYEMLRHMSPPLGLGKKCPPRVAYKRLVKMNMPIAED
NTVHFTSTLMALIRTALEIKLASGVPNQHQSDTELRKEICTVWPNLSQKTLDLLVTPHKP
NELTVGKVYAALMIFDYYKQNRIKRIQQQQLQQQLQSAGGLAQNKTGALFQPMLPLTFMQ
DQKPPLNNVKPSSASLNNGGTLPGLEGTSKESPSWVTERTQEVFQRSSKRTIERGHSEDT
PNSSGVQESVEMRKMDSHGDPQPVLENQGRAASMPRLTAETQRSKSRSPGSYLAPIPDSS
PIKRSVSTLTPQRPLEVNLQDYSLERTAPDRTHHHHHHHHHHCHRRREKDRKQHSLERSP
SRQASTDAGTPGDPASSTLLGEPASRDRGRERGRSHERKHHSSSSEKQRYYSCDRYGSRD
HSQPKSSNPSRSTSPCEGQDRQGSGSVNGSLVLLSSGASTPCRGRRQLPQTPLTPRPNVT
YKTANSSPVQFSAGLPNFSPARLSRGLSEHNALLCGDSQNQSHIAVTRIGSDPYLGHRND
SAEPEDALTFEDALASNMGRAPRTSYTVTTPTQPQQSRGVPNSYHYAVGVSAGPGSGTRG
RRYYYEADQDDWC
NT seq
6882 nt
NT seq
+upstream
nt +downstream
nt
atggctatctttggagacgacctaccaacccgctatggaggcggcggtccgccgggcgct
gggcgagggggaaaccggcagggaggcccccaagtcgcaccaaggatgtacaagcagtcg
atggctcaaagggccaggactatggctctgtacaaccccatccccgtcaaacaaaactgc
ttttcggttaacagatccctcttcatctttagcgaagacaatatcatacgaaaatatgcc
aaaagaataacggaatggcctccatttgagtacatgattctagccacaatcatagcaaac
tgcatcgtcctggcgttggaacaacacctgccagcaaaggataagacacccatgtcagca
agactggacgatacagaaccctactttattggaatattttgttttgaagccggcataaag
atcattgccctgggctttgcctttcacaaaggcacctaccttcggaatggctggaacgtc
atggattttgtagtcgtcctgactggacagagctccaggttacaggtagatctgccgggc
tgttctaactggcttcctccccaatgtattccaggtgagcagacggtggattacccctgt
ggcactgagccccctgcgcggacctgtcctgtcggatcagagtgtagggagtactggatc
ggacccaactttggcatcaccaactttgataacatcctgttcgcagtgctcaccgtcttc
cagtgcatcaccatggagggctgggtggagatcctgtacagcgcgaatgatgctgcagga
aacacgtggaactggctctacttcatccccctcatcatcatcggctccttcttcatgctc
aacctggttctgggagtgctgtctggagagtttgctaaagagcgcgagcgggtggagaag
aggagggagttcctgaagctccgcaggcagcagcagatcgagcgagagctgaacgggtac
ctggagtggatctgtaaggcagaggaagtcatgttagctgaagaagataagaacgcagag
gagaaatctcccttggatgttttgaaaagagcgaaaacgaagaagagcaagaacgacctg
atccacgcggaggaaggggaggaccacttcactgacatcacctccatgggatctccgttc
gcacgagccagcctgaagagtgggaagaacgaaagctcctcctacttcagacgcaaggcg
aagaggttccgcttcttcatccgtcgcatggtgaaggcgcagagcttctactgggcagtc
ctctgcgtggtggccctcaacactctctgtgtggccatcgtgcactacgaccagcctcag
tggctgaccgacgcactgtatttcgctgagtttgttttcctggggctgtttctgactgag
atgactttgaaaatgtatgggctgggcccacggaactactttcactcctcgtttaactgt
ttcgactttggggtgatcataggcagtatttttgaggtgatctgggctgcagtgaagcct
ggagcttcatttggtattagtgtgctgagagcactgcggctgctgaggattttcaaagtg
acaaagtactggaactctctgcggaacctggtcgtgtctctgctcaactccatgaagtcc
atcattagcctgctgttcctgctcttcctcttcatcgtggtcttcgctctgctgggcatg
cagctcttcggcggacagtttaatttcaatgaggaaacgccaacgacaaatttcgataca
tttcctgctgcgattctcacggtctttcagatcctgaccggtgaggactggaatgcagtg
atgtatcatgggattgaatcccaaggtggcgtccgcaaaggaatgctgtcgtctatctat
ttcatcatcctcaccttgttcggtaactacacgctgctcaatgtcttcttggccattgct
gttgacaacttggccaatgcacaggaactaacaaaggatgaggaagaactggaagagcaa
accaatcagaaacttgccctccagaaggccaaggaggtagcagaagtcagccccatgtcg
gtcactaacatttccattgcagcttttgtaaagcaaactcgaggtgctctatcttgcagc
tcgtccgtctccagcgttaattcagccagggagcagcagaaggcgatgaagctgatgtcg
gtgtgggagcagcgcaccacgcagatccggaggcacaatctgcaggcgagctgcgaggct
ctgtacaacgagctggaccctgaggaacgcatgcgactctcctccttgctgcacatccga
cctgacatgaagacgcacctggaccgccccctggtggtggagccccgtgaagaggtccgc
aacaacgtgggggaggcagccgagaaatccccggcccaggaaaccaccgacacggccccc
aggaaacaccaccgtcaccgggacaaaccggccgagcagcagcaggacaaaaccgaagga
tccaacgagaacggagagtccagcgggaaagaggggaggcaccgctcccaccacagccgg
agcaaagaacaggagggcaaggaggggaagagcgagcgcagccggagcagggaacggggg
aagaggcaccaccaccaggtctctgtggaggagggggcggagaaggaacacaggaggcac
cggtctcaccggcactccgccgagcgccaggccaaggagggcaacggcaccgttaacaac
gggaagggagagaggcgcccccggcacaaggacggctctcgatccaccaacaaagaggga
gaggcaggaaccaagggggagaacggggagcggccagagaaacgccacaagcaccgctcc
aaagccatgtccacttacgagggggaggagaagaaggagaaggagggagaggctggggag
aaggagcacaagaaccactggccaaagcagaatcaggccgagaccgagccagggaccctg
gcctccacacccctgcaggccccaggcagcctgaatccagtggaggagaagcccgaagac
tcagacaaccagaagaacgtgaagcgaacgatgcagacgatggacaacaccaacactgtg
cacatccccgtcaccatcacagcaccgcctggggagaccaccgtcattcccatcaacaac
gttgatttcgaaactttggcaaaaaatgaagagaaaaagaacctggaagatctcaccaga
aacggaccgaagcaaatcctgccctacagctccatgtttgtgttcacttcatccaaccct
gtacggaggctgtgccactacattgtgaacctgcgctacttcgagatgtgcatcctggtg
gtgatcgtcatgagcagcatcgccctggcagccgaggatccagtagagaccgaggctccc
agaaacaaggtcctcaaatatttggactacgttttcactggagtcttcacgtttgagatg
gtgatcaagatgatcgatttgggcctgttgcttcaccccgggtcttatttccgagacctg
tggaacattctggatttcattgtagtcagtggtgccttggtagcgtttgccttttcaagc
ttcatgggagcacaccaaagtgttgccagaggaacgaaaggaaaggacctcaacacaatc
aaatccctgcgagtactcagagtcctccggccactgaagacgatcaagcgactgcccaaa
ctcaagtcggtgtttgactgtgtggtaaactctctgaagaacgtgctcaacatcctgatt
gtctacatgctcttcatgttaatcttcgctgtcatcgccgtgcagctcttcaaagggaag
ttcttctactgcactgacgagtccaaggagctcgagaaggactgcaggggtcagtttttg
gattatgagaaggacgaagtggacgcacagccccgggagtggaagaaatatgatttccat
tatgacaacgtgctgtgggccttcctgacgctcttcactgtctcaacgggagagggctgg
ccaaccgtcctgaagcactccgtggatgccacctatgaagaccaaggtcccagccccggc
ttccgcatggagatgtccatcttctacgtagtctactttgtggtcttccccttcttcttt
gtcaacatctttgtagctttgatcatcatcacctttcaggagcagggtgacaaagtgatg
tcggagtgcagcctggagaagaatgagagggcctgtattgactttgccatgagtgccagg
cctctgacccgctacatgccccagaacaagcaagccttccagtacaagatgtggaagttc
gtggtgtctccccccttcgagtatttcatcatggccatgatcgccctcaacactgtggtg
ctcatgatgaagttccatggagcccccgatgcgtatgaagccatgctgaagtacctgaac
attgtgtttacagctctcttctccttggagtgtattctgaagatcatagcgtttggtcca
ctgaattacttaaaggatgcctggaacgtgttcgactttgtcacagtactgggaagtgtc
actgacattttggtcactgaaattaatacaacgaataaactgatcaacctgagtttcctg
cggctgttccgagcggcaagactgatcaaactgctccggcagggctacaccatccgcatc
ctgctgtggaccttcgtccagtccttcaaggctctgccctacgtctgcctcctcatcgcg
atgctgttcttcatttatgccatcattggaatgcaagtgtttggaaacattgctctgaat
ggtgaaactgcaatcaaccatcacaacaacttccgaactttcttccaggctcttatgctg
ctgttcaggagcgctacgggggaggcctggcacgagatcatgctgtcgtgtctgagtagc
cgcgactgtgacgagcgctcggggtcggacggcaaagagtgtggcagcgacttcgcatac
ttctactttgtgtccttcatcttcctctgctcttttctgatgctgaacctctttgtcgct
gtcatcatggacaactttgagtacctgactcgagactcctccatccttgggcctcatcac
ctggacgagttcatccgcgtctgggcagagtatgaccctgcagcctgtgggcgcatcact
taccttgatatgtatgagatgctgagacacatgtccccacccttaggactgggaaagaaa
tgtcctcccagagtcgcatacaagcggcttgtgaaaatgaacatgccgatcgctgaagac
aacaccgtgcacttcacctccacgcttatggccctgatcagaactgctctggagatcaag
ctggcctcaggcgtgccgaatcagcaccagagcgacaccgaactgaggaaggaaatctgc
acagtctggcccaatctttctcagaagacgctggatctgttggtgactcctcacaagcct
aatgaactgactgtgggtaaggtctacgcagccctgatgatctttgactactacaagcag
aacaggatcaagcggatccagcagcagcagctgcagcagcagctacagtccgcaggggga
ctggcccagaacaagaccggcgccctcttccagcccatgttgccactcaccttcatgcaa
gaccagaagcctcctctgaacaacgtgaagcccagctctgcctcgctcaacaacgggggc
acgctgcctggactggaagggactagtaaggaatctccatcctgggtgacggagcgcact
caggaagtgtttcaacggagcagcaagcgtacgatcgagagagggcactctgaggacacc
ccaaacagcagtggtgtgcaggagtcggtggagatgaggaagatggactcccatggggat
cctcagcctgtgctagagaaccagggccgggcagcctccatgccacggctgacagcagag
acacagaggagcaagtctcgatccccggggagttacctagcaccgatcccggactccagt
ccaataaagcgctccgtgtccacgctgaccccacagcgccccctggaggtgaacctgcag
gattactctctggagcgcacggcccccgaccggacacaccaccaccatcaccaccaccac
caccactgccaccggcgccgcgagaaggacaggaagcagcactcgctggagaggtccccc
agccgccaggccagcacagacgcaggcacacccggtgacccagcatcctccaccctgcta
ggggagcctgcatcgcgggacagggggcgcgagagggggcggtcacacgagaggaagcat
cactcctcctcctcggagaagcagcgctactactcctgcgaccgctacgggagccgagac
cactcccagcccaaatccagcaacccgagccgctccacctccccctgtgagggccaggac
agacagggcagtggttcagttaatgggagcctggtgctgttgagctctggtgcgagcacc
ccttgccgaggacgcaggcagctgcctcagacgcccctcacccctcgccctaacgttacc
tacaagacggccaactcctcccccgtgcagttcagtgctggcttgcccaacttctctccg
gcccggctgagtcgaggcttgtccgagcacaacgctttgctgtgcggcgactcccagaac
caatcccacatcgctgtgacccgcatcggctccgacccttacctgggacacaggaacgat
tcagctgagccagaggatgcgttgaccttcgaggacgctctggcctccaacatgggacga
gcccccaggacttcttacacggtcaccaccccaacgcagccccagcaaagccggggggtc
cccaacagctaccattacgctgtgggtgtcagcgcgggccccggctcgggcactaggggg
cgccggtactattacgaggcggaccaagacgattggtgctag
DBGET
integrated database retrieval system
