Polyodon spathula (Mississippi paddlefish): 121306698
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Entry
121306698 CDS
T07273
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04020
Calcium signaling pathway
pspa04080
Neuroactive ligand-receptor interaction
pspa04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121306698 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121306698 (grin1a)
04082 Neuroactive ligand signaling
121306698 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121306698 (grin1a)
Ion channels [BR:
pspa04040
]
Ligand-gated channels
Glutamate (ionotropic)
121306698 (grin1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Motif
Other DBs
NCBI-GeneID:
121306698
NCBI-ProteinID:
XP_041094483
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Position
49:complement(27430..48908)
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AA seq
974 aa
AA seq
DB search
MRLFLLAVFFSCSFARGGCDPKIVNIGAVLSTKKHEQMFREAVNLANKRYGSWKIQLNAT
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMRVFRWNHIILIVSDDHEGRAAQKRLETL
LEEKESKNKKRNYENLDQLSYDNKRGPKAEKVLQFEPGSKNVTSLLLEAKELEARVLILS
ASEDDAATVYKAAAVLNMTGSGYVWLVGERELSGNALRYAPDGVIGLQLINGKNESAHIS
DAVAVVAQSVHELFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGVTGRVEFND
DGDRKYANYSVMNLQNRKLVQVGVYNGSHVLLNDRKLIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTLLDGTCPEEFTVNGDLIKKVICTGPNETIPGNKTGRPIVPQCCYGFCI
DLLIKLAKTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQGDMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNQLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDNKEAPGREVLGRAGTP
RLTSIFLETQDDRKSGSAEPDPDPDPKTKATFRSISTTLASSFKRRRSSKDTQYHPTDIT
GQLNLSDPSVSTVV
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttttcctgcttgcagtatttttttcttgctcctttgcaaggggcggctgcgat
cccaagatcgtgaacatcggcgccgtgctgagcaccaagaagcacgagcagatgttcagg
gaagccgtgaacctcgcgaacaagcggtacggcagctggaagatccagctgaacgccacc
tctgtcacccataaacccaacgccatccagatggctctgtccgtgtgcgaggacctcatc
tccagccaggtgtatgcgatattagtgagtcacccaccagctccgaacgatcacctgacc
ccgacgccagtgtcctacacagcagggttctaccgcataccagtggtggggctgaccacg
cgcatgtctatatactctgataagagtatccacctgtcgttcctgcgcaccgtgcctccc
tactctcaccaagcccacgtgtggttcgatatgatgcgcgtgttccgctggaaccacatc
atcctgatcgtgagcgacgaccacgagggccgcgcggcgcagaagaggctggagacgctg
ctggaggagaaggagtccaagaataaaaagaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggctgagaaagttctacagtttgaacccggatccaaa
aacgtaacgtcactgctgctggaggcgaaagaactggaggccagagtgctgatcctgtca
gcgagtgaggacgatgctgccacagtgtacaaagcagctgccgttctgaacatgaccggc
tccgggtacgtgtggctggtgggtgagagagagctgtcaggaaacgccctgcgatatgcg
cctgacggcgtgattggactgcagctcattaatgggaagaacgagtcggcgcacatcagc
gatgccgtggcagtggtggcacagtccgtgcacgagctctttgagaaagagaacatcaca
gacccgccgcggggctgcgtggggaacaccaacatctggaagacaggccctctgttcaag
agagtcctgatgtcctccaagtaccccgaaggggtgacggggcgcgtggagtttaacgat
gacggagacaggaaatacgccaactacagcgtaatgaacttgcagaaccgcaagctggtg
caagtgggcgtgtacaacggcagccacgttttattaaatgacaggaagctcatctggccc
ggcggggaaactgaaaaaccgcgtggatttcagatgtcaacgagattaaagatagtcacg
atacaccaggagccctttgtctatgtgaagccgaccctcctggatgggacctgcccagag
gagttcacagtaaatggagacttgattaaaaaggtgatctgcacgggccccaatgagacc
atcccaggtaacaaaacaggacgccccattgtcccgcagtgttgttacggtttctgcatc
gacctgcttatcaagctggccaagacgatgaacttcacatacgaggtgcatctggtagct
gatgggaagtttggaacgcaggaacgagtgaacaacagcaacaagaaggagtggaacggg
atgatgggagagctcctcagcggtcagggagacatgatcgtggctcctctgaccatcaat
aatgagcgtgcccagtacatagagttctccaaacccttcaagtaccagggactcaccatc
ctcgttaaaaaggaaatcccgcgcagcaccctggactcattcatgcagccgttccagagc
acgctgtggctgctggtcgggttgtcagtgcacgtggtggctgtgatgctgtatctactg
gaccgcttcagcccgtttggacggtttaaagtgaacagtgaggaagaggaggaggatgcc
ctgaccctgtcctcggctatgtggttctcctggggggtgctgctgaactctgggatagga
gaaggggctccccggagtttctcggcacggatcctggggatggtgtgggccggcttcgct
atgatcatcgtcgcctcctatactgccaacctggctgccttcctggtgctggacagaccg
gaggagcgaatcaccgggatcaacgacccccggctgcgaaatccatctgacaagtttatc
tacgcgacagtgaagcagagttcagtggacatctacttccgacggcaggtggagctaagc
acgatgtaccggcacatggagaagcacaactacgagagcgcagccgaggcaatccaggcc
gtccgagacaaccagctgcatgccttcatctgggactctgccgtcctggagtttgaggca
tcccagaagtgtgacctggtcaccactggagagctcttcttccgctcaggcttcgggatc
gggatgaggaaggacagcccctggaaacaaaatgtctccctcgccatcctcagttcccat
gaaaacggcttcatggaagacctggataaaacctgggtgcgataccaggagtgtgattcc
cgaagcaacgccccagcgaccctcaccttcgagaacatggcaggtgtgttcatgctggtt
gctggaggtatcgtggccggaatatttttgatatttattgaaattgcgtacaagcgacac
aaagacgcgcggagaaagcagatgcagctcgcgttcgctgccgtcaatgtctggaggaag
aacctgcaggacaataaggaggctccaggcagggaagtacttggtcgagccgggactccg
agattaacgtctatctttctagagacacaggatgatagaaaaagtggtagcgcagagccc
gaccccgaccccgaccccaaaacgaaagccacttttaggtccatcagtaccaccctggcc
tccagcttcaagagacgtaggtcctccaaagacacgcagtaccacccaacggacatcaca
ggccagctgaacctgtccgacccgtcagtcagcactgtggtgtga
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