Polyodon spathula (Mississippi paddlefish): 121306800
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Entry
121306800 CDS
T07273
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
KO
K13175
THO complex subunit 6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121306800 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
121306800 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121306800 (thoc6)
03041 Spliceosome [BR:
pspa03041
]
121306800 (thoc6)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121306800 (thoc6)
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121306800 (thoc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_THOC3
WDR55
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
WDR54
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Tricorn_2nd
Beta-prop_NUP159_NUP214
WD40_like
WD40_RFWD3
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
121306800
NCBI-ProteinID:
XP_041094662
LinkDB
All DBs
Position
50:complement(1647204..1654625)
Genome browser
AA seq
332 aa
AA seq
DB search
MGPNEFDPQRSLQVLHMTVFSQSFSPCGKFLAAGNNYGEIGIFSLSAALGPEATEDSKTP
IVTFKAHDGPVYSLLSTDSQLLSAGNGEVRAWNWAELVKKGSKVVWSHKPQCKTSLEVPE
INAMIINPKDNSLLLAGGDNKIHVMDLESGEFKMVLEGHSDYIHCLALRDSAGECLSGSE
DGAVRIWDFRTGRQVHSIEVFKYQECSRPQYGKYISCLTTDSDWMLCGGGPSLSLWHLRS
ITPTTVYPVPGCQRDACFHQDLVLSVGDGPFVSHCHLSGDVKATIPCTSPSLYSMRLNHS
SQEHRVLSVAGSSSKIDIFTNFGYRAFSLVFT
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgaacgagtttgatccacagcgttcacttcaggttctgcacatgactgttttc
tcccagagtttttctccctgcggaaaattcctggccgcgggaaacaactacggagaaata
ggaatattcagtctctctgcagctttgggtcctgaagctacagaagacagcaagacgcca
attgtaacatttaaagctcatgatggtccagtctacagcctgctctccacagactcccag
ttactgagtgctgggaatggggaggtgagagcctggaactgggctgaactggtcaagaag
ggtagtaaagtggtttggagtcataaaccacaatgcaagaccagtctagaggttcctgag
atcaacgccatgattatcaacccaaaggataactcattgctgttggctggaggcgacaat
aagatccacgtcatggatctggagtctggcgagttcaagatggtgttggaaggtcattct
gattacatccactgtctggctctgcgtgactctgctggagagtgtctatctgggagcgag
gacggagctgtccggatctgggatttccgaacaggccgccaagttcattcgatcgaagtt
tttaaataccaggaatgctccaggcctcagtatggaaaatatataagctgcctgacaacg
gattctgattggatgctgtgtgggggggggccctccctctctctctggcacctccgctcc
atcaccccgaccacagtgtacccagtcccgggctgccagagagacgcctgcttccaccag
gacctggtcctgtcggtgggggacggccccttcgtttctcactgccacctcagcggagac
gtgaaagcgacgatcccctgcacttcccccagtctgtacagcatgagattgaatcacagc
tcgcaggagcaccgggtcctgtctgtggccgggagcagcagcaaaatagacatctttacc
aactttgggtatagagcattctccctggtgttcacctga
DBGET
integrated database retrieval system
