Polyodon spathula (Mississippi paddlefish): 121306841
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Entry
121306841 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121306841
09122 Translation
03013 Nucleocytoplasmic transport
121306841
03015 mRNA surveillance pathway
121306841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121306841
03041 Spliceosome [BR:
pspa03041
]
121306841
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121306841
Spliceosome [BR:
pspa03041
]
Complex C
Other components
EJC/TREX
121306841
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121306841
NCBI-ProteinID:
XP_041094711
LinkDB
All DBs
Position
50:complement(<2556627..2585574)
Genome browser
AA seq
2084 aa
AA seq
DB search
MAELEDVTLDGKPLHSLRVADLKAALEQRGLQKSGQKNALVKRLKGALMLENLQKHSTSH
AGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAADSEDVSAESEEETSLLDL
SASKPPDLQSIPEVPEQSGINAPSRAVSEMDSPSVQEEESSLEDRSEGYDSGSCPADQEE
SLTASLPKRRAVPARASPSPQSRRRSGTRAVRQSPAQPQPDELDSENLPGPVPGTAYSPV
SELQAAEPARSRRSRHSRDGSFSLDPSSSPVPERTSDGSEQSRPRRSSSRQIKDSVVAPG
AVLVVAPLAQQTSPTDLVVRAEAQSPGPRAVASLSVRVIGGSSDSSASEPRVAGSSVLTA
GVGGGADWETRGAPLTHVKPQQQGSAEMDKDVVLTEGVGSVRVVVEVGGGEEKAAPKERL
RRSRQLREPSPPPPDPPNPVLKCGAESFPLPDTPKQSPPASEEQAPEVGCSQVPQKAKKE
REEGGGSSFEATKRRSHQNQEPGPLSRLAKAMEEDDDDDDDDDDEDEEKVINLTLEKRES
VPEVVEKPDNLPSATAVGSAQESVLTKASVEKATTKPELPADGAVTLARSKESPEAPRGR
PREVLEKEKTGEESKALPGKARDVSKTPDKPTESSGGPQKVVEAQKPPEMLGKPAEVSEP
IASEMLGLGQTRRSADRKEAELPEKKKQSPCKSLPAAFRVVRGSPPATVEPKPALEKPKE
ANPVTGNLPVRVAMAAVAEKTAAEKISSDAKLTETETEELEAAALIDYSSSAPVKRAVRI
HKLQEGGPGKTTNQAAGEKTTETEKPKNPEEVFVAKVTDKQEQPIPTTETKEVPRESSKV
SEKGTVEKLTGVSAVPENLPLDLKLQTAVPQEDSAMPKEGQKKDAASEEAKAAAESPPKE
VLKLDSRLILQPEKGGVGEMAKGSEQTRASQSHLPFSKRGRDLGISDKRQEETREKGEAK
TSGTENESSLKPAHPEKQAEGGGSKSPQTLVMEVPTPAQEASKLSENLTAEKQEQGIDKQ
SSESPAAEPKSMEVTAGASSEKPKETLVSPTPPLVQPLPKKFRVFRDTPPSPEAGAPPKK
IRFFRDGPPAPEHPKKSFQTRRSAESIPETKPEMEQGEMEKQASLERPSEAGQLPKESGV
VSAVVVPGDAAKAAEMRKEGEAASKTAEGSAADPKKGSESGSLEREGPPLPVETKGWKPE
QGSAKEPEKKVEKTQEPENDHPKKAGGVSLEKEKESGPPKRKSRESSPLDKDLPKPAQDE
AETSGRQQAHKETLKKQEDKTPAAAAGKRAETANSSTSETPKSPEGRLMKAAREPEKEPM
GPILPPSPPPEETESGHPPTPPLSAPDTERERGRRSREEGASPSSPSSSSSSSSNSSSSS
SASSSRSSSSSSASSRSRSPSSDRRSMSPQRDSLSRDSGAFCQPEGSPDSGRPDDPPVPR
HHERRKRRAEREEEEEEEEEGEREERAGSSHSKKPCLTAEESGDVAGKDERRAEEGGSRT
EHRASELKRETSSGMMEPESLEENSKPSDEKGSKGRAEEGAQLKTFTSRKISVLSASKSL
SAVSTAEPAGGGAGAAVPGGGAGGGEADVGQAGRKRRWGSSTAVTAKKPSISITTESLKS
LIPDMKPVSAGGQEAVLDLHPDEGHLSGEESERPEGRGDPREQDRGLQIRRTVTQVVPAE
AQENGQNETSKEGGEEEAGGEEEEAERKEPQSVTMETQPPVTGETDVKKATPGGSLVRRS
ISQQKSGMSVTIDDPVRSTQHPSPPRGKPTSIVHISNLVRPFTLGQLKELLNRTGTLVEE
GFWIDKIKSHCYVTYSTMDQAVATRTALHGVKWPQSNPKFLSVEFSEQDELDFHKGLLPD
LRPAEGPRQLKESLLQRSSHPAPPPPSGPPQPRLSDRPVRDQWAEREREMERRERARAER
EWDRDKVRDYNSKQPPAGGPGGHRTGAEGPGAAGRRSRSRSRDRRRKERAKSKEKKAERK
EKAPEEPPAKLLDDLFCKTKAAPCIYWLPLTPEQVALKDVERAERMKERIKRRKEQEEEE
KKREEERMQRLKEREKEVAEKERERVRQLEKRREQRREEEEGER
NT seq
6252 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggaagacgttacgttagatgggaagccgcttcactcgctccgggtagcg
gacctgaaggccgctctggagcagagaggactgcagaaaagcggccagaagaacgcgctc
gtcaagcggctcaagggggcgctcatgttggagaatctgcagaagcactccacctctcac
gctggtttgcagcccaactcgcagattggcgaggagatgagtcagaacagcttcatcaag
cagtacctggccaagcagcaggagctcctgagacagcggctggagagagaggctcgggag
gcggctgattctgaagatgtgtctgcagagtcagaggaagagacctcccttctggacctc
agtgcctcgaagccaccggacctgcagtccatcccagaggtgccagagcaaagtgggata
aacgctccttccagagctgtttcagagatggacagcccctccgtacaggaagaggagtcg
tcgctcgaagacagatctgagggctacgacagcggatcctgtccagcagaccaggaggag
agcctcactgcttccctcccgaaacgcagggcagtaccagccagggcttccccctcccct
cagtcccggcgccgctccggcaccagagcggtccggcagagcccggcgcagcctcaacca
gacgaactggacagcgaaaacctgccgggtccggttcctggtaccgcctattcccctgtg
tcagaactgcaggcagcagaacctgccaggtccagacggtccaggcactccagagacggc
tccttctcgctggatcccagcagctccccggtccctgaaaggacctccgacggatcggag
cagtcccgaccaagacggtcgtcttctaggcagatcaaggactctgtggttgcccctggc
gcagtgttggtggtggcaccactggcgcaacagaccagtcctactgatctggtagtccgc
gctgaagcccagtcgcctggccccagagctgtggcttctctgtctgtgcgggtgattggt
ggaagcagcgactcctccgcctcggagcctcgggtcgcagggagctctgtcctaacggca
ggcgttggtggaggagccgactgggaaaccagaggtgcgcctctcactcacgtcaagcct
caacagcagggctcggccgaaatggacaaagatgtcgtgttgactgagggggtcggcagt
gtgagggtagtggtggaggtgggaggcggagaagagaaggcagcccccaaggaaagattg
agaaggtccaggcagttaagggaacccagtccccctcctccagaccccccaaatcctgtg
ttaaaatgcggggcagaaagcttccccctcccagataccccgaaacagagccctccggct
tctgaggagcaagcccccgaagtagggtgttcccaggtgccccaaaaggccaagaaagag
agggaagaaggtgggggcagctcttttgaagcaacaaagaggcgaagccaccagaaccag
gagccggggcctctgagtcgcctggccaaggccatggaagaagacgatgacgacgatgat
gacgacgacgatgaagatgaagagaaagtgattaatctgactttggaaaagagagaaagc
gtgcccgaagtcgtggagaagccagacaatttgccttcagcaacggctgtcggaagtgcg
caagagtcggtcctgacgaaagcctctgtagaaaaggccaccactaagccggagctgcct
gcagatggcgctgttacgttggcaagatccaaggaaagcccagaagctcccagaggaaga
cctagagaggtcctggaaaaggaaaaaaccggggaagagtctaaggcattaccagggaag
gctagggatgtttctaaaactccagataagccaactgagtcttccgggggaccacagaaa
gtggtagaggcacagaaacctccagaaatgcttggcaagcctgccgaggtctccgaacca
atagcttcagaaatgttagggttagggcagacccgcaggtcagctgacagaaaagaggct
gaactgcctgaaaaaaaaaagcagagtccttgtaagagtttgccagcagcattcagagtg
gttagagggagtccgccagcgacggtggaaccgaaaccggctttggagaaaccaaaagag
gccaatcccgtgactggaaatctgccagttcgggttgctatggccgcagtagcggaaaaa
acagctgctgaaaaaatttcaagcgacgcgaaattgacagagactgaaacggaagagctg
gaggctgctgctttgatagactattcttcttcagcaccggtgaaacgggcagtgcggatt
cacaagctccaagagggagggccgggaaagaccaccaaccaggccgctggagagaaaaca
acagagacggagaagcctaaaaatcccgaagaggtttttgtagcaaaggtaacagacaaa
caggagcaacccatcccaacgaccgagactaaagaggttcctcgagagagcagcaaagtg
tcagagaaagggacagtcgaaaaacttacaggagtttctgctgtgcctgaaaacctccct
cttgatctgaaactgcagacagcggtcccacaggaagactctgccatgcctaaagagggt
cagaaaaaagacgctgcttctgaagaggccaaagcagcagcagaaagtccacctaaagag
gttctcaaactggacagcagactcattctgcaacccgaaaagggaggagtcggtgagatg
gcaaaggggtcagagcagaccagggctagccagagccaccttccgttctcaaaacggggc
cgggatttgggcatatcggacaaaagacaagaggagaccagagaaaaaggcgaggccaaa
acgtctggcaccgaaaacgagagttctctaaaaccggcacatcctgaaaagcaagcagaa
gggggcggttcaaagtctccccaaactctggttatggaagtcccaacgccagcacaggag
gcttccaaactctcggaaaacctgacagccgaaaagcaggagcagggaatcgacaaacag
tcttcggaaagtccagctgctgaacctaaatccatggaggttacagcaggagcgtcgtca
gaaaaacccaaggagaccctagttagccccacaccgccgctggttcaacccctgcctaag
aaattcagagtctttcgagacacccctccgtctccagaggctggggcaccaccaaaaaag
atccggttcttcagggacgggccgccagctccggagcacccgaagaaaagctttcaaacc
cggaggtcggccgaaagcatccccgaaacaaaacctgagatggagcaaggggagatggag
aagcaggctagcctggagcgaccttcagaggctgggcagctgcctaaggagtctggggtg
gtgtctgccgtggtggtacctggagacgctgcaaaggctgcggaaatgcgtaaggaaggg
gaggcggcaagcaagactgcagaaggaagtgctgcagaccccaagaaagggtcagaaagt
gggtccctcgaaagagaaggccccccactgcctgtggaaacaaaagggtggaagccagag
caggggagtgccaaagagcctgaaaaaaaagtggagaagacacaggagcctgaaaacgat
catccgaaaaaggcaggaggagtttccctcgagaaggaaaaggagagcggccctcccaag
agaaaatccagggagagctcccccttggacaaagacctccccaaaccagcacaggatgaa
gcagaaacttccggcaggcagcaggcacataaagagacgcttaaaaaacaggaagataag
acccccgcggcggctgccgggaaacgggcagaaaccgccaactcttcaacttccgagacg
cccaaatccccagaggggcggctgatgaaagctgcgagagagccggagaaggagcccatg
ggccccatcctgccaccctctcctcccccagaggagacggagagtggccacccgccgacg
ccacccctctctgcccccgacacggagagggagagggggaggcggagcagggaggaggga
gcctctccttcctctccctcttcgtcgtcatcttcctcctctaactcgtcttcctcatct
tcggcctcttcctctcgttcgtcgtcatcgtcgtctgcttcttccaggtcaaggtcaccc
tctagtgacaggaggtctatgagcccccagcgtgactctctctccagagatagcggtgct
ttttgccagcctgaggggtcccccgattcagggcgccctgacgacccccccgtgccccga
caccatgagaggcgcaagagacgagccgagagagaggaggaggaggaggaggaggaggaa
ggggagcgcgaggagagagccgggtccagccacagcaagaagccttgtctgacggcagag
gaaagtggtgatgtggctggaaaggatgagaggagagctgaggaaggagggagcaggaca
gaacacagagcgagtgagctgaaacgagagacctcgtctggtatgatggagccggagagc
ctagaagagaacagcaagcccagtgatgagaaggggagcaagggtcgagcagaggaggga
gcgcaactcaaaacatttacctccaggaagatctcggtgctgtcagccagtaagtctctc
tctgcagtttccactgccgagccagcagggggcggtgcaggagcagcagtcccaggtggg
ggagcagggggaggggaagcagacgtgggtcaggctgggaggaagagacgctggggttcg
agcaccgcagtgactgccaaaaaaccatccatcagcatcacaacagaatcgctcaagagc
ctgattcctgatatgaagcctgtgtctgcgggaggccaggaggctgtgctcgatttgcac
ccggatgaagggcacctgtctggggaggagagcgagaggccggagggtcgaggagacccc
cgagagcaggacagggggctccagatccgcaggactgtcacacaggtggtccctgcagag
gcccaggagaatggacagaacgaaacgagcaaggagggaggggaggaggaagctggggga
gaggaagaggaagcggagaggaaggaaccccagagtgtaaccatggagacccagccgccg
gtcaccggggaaacggacgtcaagaaagcgacccctggtggttctctagtgcggcgttcc
atcagccagcagaagagtggaatgtccgtcaccattgacgacccggtccggagcacccag
catccctcgcccccccgtggcaaacccaccagcatcgtgcacatctccaacctggtcaga
ccattcacactgggtcagttaaaagagctgctgaacagaaccggtaccctggtggaggaa
ggcttctggatcgacaagatcaaatctcactgctatgtcacgtattccacaatggaccag
gctgtggctacgaggactgcgctccacggggtgaagtggcctcagtccaaccccaaattc
ctttctgtggagttttcagagcaagatgagcttgacttccacaaaggtctgctgccagac
ctccggccagcagagggccccagacagctgaaggaatctctcctccaacgctcctcccac
cctgctcccccacccccctccgggcccccgcagccccgcctctcagaccgacctgtccgg
gaccagtgggcggagcgagagcgggagatggagaggcgggagagagcgagggcggagcgg
gagtgggatcgtgacaaggtgcgggattacaacagcaagcagccaccagcagggggccca
ggggggcatcgcaccggagcagaggggcccggggcagccggacggaggtcccgctctcga
tcccgggacaggaggcgcaaggaaagggccaaatctaaagagaagaaggcggagaggaaa
gaaaaagcccctgaggagcccccggctaaactcctggacgatctcttctgcaaaaccaag
gctgctccgtgcatctactggctcccactaacaccagagcaggtggctctgaaagacgtg
gagcgtgcagagagaatgaaagagagaatcaagcgccgcaaagagcaggaagaggaggag
aagaagagggaggaggagaggatgcaaagactgaaggagcgagagaaagaggtggctgag
aaggagagggagcgagtgaggcagctggagaagaggagagagcagaggagagaggaggag
gagggggagaga
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integrated database retrieval system
