Polyodon spathula (Mississippi paddlefish): 121306953
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Entry
121306953 CDS
T07273
Symbol
itga10
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-10
KO
K06586
integrin alpha 10
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121306953 (itga10)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121306953 (itga10)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121306953 (itga10)
04810 Regulation of actin cytoskeleton
121306953 (itga10)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121306953 (itga10)
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin alpha subunits
121306953 (itga10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
VWA_2
vWA_SIBA-E
ITGAX-like_Ig_3
LapA_dom
Motif
Other DBs
NCBI-GeneID:
121306953
NCBI-ProteinID:
XP_041094910
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All DBs
Position
51:1260057..1284158
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AA seq
1125 aa
AA seq
DB search
MLVGAPWDGPANNRKGDVYKCIVGEERHSNCSKVNLGDTALQNVSKQIRNTHFGMTLADN
KGEGFVACAPLWSQECGTSVFSNGICAKVDQNFQPIETIAPTAKRCSTFMDIVIVLDGSN
SIYPWYEVQNFLSNILRKFHISPEQMQVGVLQYGEVSVHEWSLHDYQTTKEVVEAAKNIS
RQEGRETRTAYAIHMGCSEAFSPERGAREGAAKVMIVVTDGESHDGEELPEALAECEKRN
ITRYAIAVLGHYIRRQQDPETFISEIKYIASDPDDKYFFNVTDEAALSDIVDALGDRIFS
LEGTLGSNESSFETEMSQIGFSTHMLEDGILFGMVGAYDWDXSLLKEGRQGRIMPDPPEG
FVLQMVMNLSSRVCYLSAGYTVSSVTVKNGKHLYVAGAPRFKHKGKVILFDLKQNGSVTI
AQALNGEQIGSYYGSEVCPIDVDGNGITDVLLVAALARAXYLERGERIGEGMRVYMYTLN
RVLFSFNGTLQPHRRVQDARFGYSLGAAPDLNHDGFNDLVVGAPLEEGHRGAIYIYHGHR
TTILPLYKQRVSASALSSALQYFGRSVSGQLDLDGDGLVDLAVGAQGSAVLLSSRSVVRV
TVTVVFEPRSINVIQRNCQRNGRDSACITATVCFSVASRSPSNQREPFDLQVSSSLDDRK
FVSRALFDETSHKQIQRVLRVRVDEVACRTLPFHVIDTLDYIRPIGFALRFKMNSSEAGP
VLDEGSLTFVKKFIPFFKDCGEDDVCVTDLVLQAHLGIAGTRQDPYIIRSPHRRLSVELV
LENRRENSYNTSLSIEFSKNLHFSSLSVKDEPQFKIECTVLAPSISSCNVSYPVFRAKAE
VRLSLDFDFSCSSLLNRVQVKLSAGSDSVEEDTLQDNSAELLAMVRYEPDLFITSEASLN
RYEVHPSRTASEGIGPEFHTFYKIHNLGCYTVTNLEFQIHLPSVASGDKHFLTITDVATQ
NATGVNCSLESDLELMKQRQGDAVRPVHPEDMLFTQTLNCSNSWCAVVLCQLDQLQRNQA
ALIRVSRRVHDDFYQEAQFRSVRIVSGHVLRANDSGVIVLGQSGQWRESLLEVMKGRRIP
VSLWILISSIIGGLLLLSLIIFILWKLGFFARKSREEEEERDKEE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgctggttggtgccccgtgggatgggccggccaataacagaaagggagacgtctacaag
tgcattgtgggagaggagaggcactcgaactgcagcaaggtgaacctgggagacacggct
ctccagaatgtatccaagcagatcagaaacacacacttcggcatgacgctcgcagacaat
aaaggtgaaggatttgtggcctgcgcccccctgtggtcacaggagtgcggtacctcggtt
ttcagcaacgggatctgcgccaaagtggaccagaacttccaaccaattgagacgatcgca
ccaaccgcaaagaggtgctccaccttcatggacattgtgatagtcctggacgggtccaac
agcatctacccctggtacgaggtacaaaacttcctcagcaacatcctcaggaagtttcac
atcagcccggagcagatgcaggtcggggtgctgcagtacggggaggtttcggttcacgaa
tggtctctccacgactaccagaccaccaaggaggtcgtggaggcggccaagaacatcagc
aggcaggagggacgggagacgaggaccgcgtacgccatccacatgggctgttccgaggca
ttcagcccagagagaggggcccgagaaggagcggcgaaggtgatgattgtggtgacggac
ggagagtcacatgacggggaggagctcccagaggcgctggccgagtgcgagaaacgaaac
attacgcgctacgccatcgcggttttggggcactacattcggagacagcaggaccccgag
actttcatcagcgagatcaagtacatcgccagtgaccctgacgacaaatacttcttcaac
gtgacggatgaggcagcgctcagcgacatcgtggacgctctgggagaccgcatcttcagc
ctggaggggactctggggtccaacgagagctctttcgaaacagagatgtctcagattgga
ttctccacacacatgctggaggacggcatcttgttcgggatggtgggggcctatgactgg
gacnactccctgctgaaggagggcagacaggggcgcatcatgcccgacccccccgaaggc
tttgtcttgcaaatggtgatgaatttaagttctcgtgtctgttatttgtcggcaggctac
acagtttcctccgtgacggtgaagaatggaaagcacctctatgttgccggagcgccgcgc
ttcaaacacaaaggaaaagtgatcctcttcgatctgaaacagaacggcagcgtcaccatc
gcacaggctctgaatggagagcagattggctcgtactatggcagcgaggtttgcccaatc
gacgtggatggaaacggcatcaccgacgtgctgctggtcgctgctctggctcgagcatga
tacctggaaagaggggagaggataggggagggcatgagggtgtatatgtacacactgaac
agagttctgttctcattcaacggaacgctgcagccgcaccgccgggtccaggacgctcgc
ttcggatactcgctgggggcggcgccggacctcaaccacgacggcttcaacgacctggtg
gtgggggcgccactggaggaggggcatcgtggagcgatatacatctaccacggccaccgg
accaccatcctgccactttacaaacagagagtctctgcctcagccctgtcctcggctctg
cagtattttggacgcagtgtgagtggacagttggacctggatggggacgggctcgtggac
ctggctgtgggagcgcagggcagcgctgtgctgctcagctcccgcagcgttgtgcgcgtt
accgtgaccgtggtctttgagccacgctccatcaacgtgatccagaggaactgccaacgc
aatggccgggactccgcctgcatcaccgccacagtctgcttcagcgtggcctcacgctca
ccgtccaatcagagagagccgttcgatcttcaggtcagctcctctctggatgatcggaag
tttgtgtcccgggctctgtttgacgagacgtctcacaagcagattcagagagtgctccgg
gttcgagtggacgaggtcgcctgccgcacgctgcccttccacgtcatcgacacactggat
tacattcgcccgatcgggttcgctctgcgcttcaagatgaacagttcggaggcagggcct
gtgctggatgagggcagcctcaccttcgtcaagaagtttatcccgtttttcaaagactgc
ggcgaggatgatgtgtgcgtgactgacctggttctgcaggcgcacctgggcatcgcggga
acgaggcaggacccctatatcatcaggagcccccatagaaggctgtctgtggagctggtg
ctggagaatcgcagagagaactcctacaacaccagcctcagcatcgagttctccaaaaac
ctgcatttctccagcctgtccgtgaaggacgagccccagtttaaaatcgagtgcacggtt
ctggcgcccagcatcagctcctgcaatgtcagctatcctgtcttcagagcaaaggccgag
gtgaggctcagcctggactttgattttagctgctcgtctctgctgaaccgcgtgcaggtg
aagctctccgctgggagcgacagtgtagaggaagacactctgcaggacaactcagctgag
ctgctggcaatggtgagatacgagccagacctcttcattaccagcgaagccagcctcaat
cgctacgaggttcatcccagcaggacagcatccgaagggatcggaccggagttccacacc
ttttacaagattcacaatctgggctgctacaccgtcactaacctggagtttcaaatccac
ctgccttcagtggcttctggagacaagcactttctaaccatcacagacgtggcaacacaa
aatgcgacgggtgtgaactgcagtctggagagtgatctggagctcatgaagcagaggcag
ggagacgctgtgcgacccgttcatccagaagacatgctgttcactcagaccctgaactgc
agtaactcgtggtgtgctgtggttttgtgtcagctggaccagctgcagcggaaccaggca
gcgctgatccgggtcagcaggagagtccacgatgacttctaccaggaggcccagttccgg
tcggtgaggatcgtgagcgggcacgttctccgagcgaacgactcgggcgtgatcgtcctg
gggcagagcgggcaatggagagagagcctcctggaggtgatgaagggccggcgcatccca
gtctctctctggatcctcatcagcagcatcattggaggcctgctgctcctctccctcatc
atcttcatcctgtggaagctgggattcttcgccaggaaatcgagagaggaggaggaggag
agggataaggaggagtaa
DBGET
integrated database retrieval system
