Polyodon spathula (Mississippi paddlefish): 121306988
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Entry
121306988 CDS
T07273
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121306988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121306988
03032 DNA replication proteins [BR:
pspa03032
]
121306988
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121306988
mRNA cycle factors
Common to processing body (P body) and stress granule
121306988
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121306988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
121306988
NCBI-ProteinID:
XP_041094977
LinkDB
All DBs
Position
51:complement(1544348..1555322)
Genome browser
AA seq
697 aa
AA seq
DB search
MSGPGQDGEPEAKALHTKRLYRAVVESVHKLDLIISNKSSFREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHVHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKAVSASAKEMDWAQMACHRCLVYLGDLAR
YQNELAGVEAELLAERFYHQALSVTPHVGMPFNQLGTLAGSKYYNVEATYYYLRCIQSEM
PFEGAYGNLKRLYDKAAKMYHQVKKQEMKKLSPTKQRSKDVKRLLVSFMYLQSLLQPKNS
LQESELTSLCQSVLEDFNLVLFYLPSPSHSTSGCEEEEDHESRYSFIPDVLVFRMVVTCL
MVVHNLKRAGSKQYSAAIAFTLAMFSHLVNHVNIHLQAELEEGESGVPVLHTDDLEVKDG
VTLTPEEGTLQNGMAEEEEEEEEEEEEEEEEEEERSGKGADGLKKPSNSTDKTKKMGKKK
YSRLSRLRRRRYAGKEDESDLSEGFESEGERGGRAGGRRVGAAVVSTAITRAKHKGTDWE
SGSERSEEDYEEEEAETAFDVETDSDMNSQESRSDLEDIEDEKTELAGVPDTLDSADSKP
LEKAEPSPAVNGPSPPSGSDSSIASNLQAMSSQLFQTKRCFRLAPTFSNVLLRPCSAPEA
SGGGSSPQPTALDQTPLASSNPSATPHTASDNGEASA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagcggccccgggcaggacggcgagcccgaggcgaaagccctccacaccaagcggctg
taccgagcggtagtggagtcggttcacaagctggaccttatcatcagtaacaagtcatcc
ttccgggaggtgttcaaacctgagaacatcagcctgcgcaacaagctcagagagctgtgt
gtcaagctgatgttcctgcaccctgtggattatgggaggaaggcagaagagctcctctgg
aggaaagtgtactatgaggttattcagctcatcaaaaccaacaagaagcatgttcacagc
cgcagtgccctcgagtgtgcctacaggacccacctgatcgctggggtgggcttctaccag
cacctgctgctctacatccagtcccactaccagctggagctgcaggactgcatcgactgg
acccacgtcacagaccccctcatcggccggaagaaagcggtctccgcctctgccaaggag
atggactgggctcagatggcctgccatcgctgcctggtctacctgggagacctagctcgc
taccagaacgaactggcaggcgtggaggcagagttgctggctgagaggttttaccaccag
gctctgtctgtgactccacacgttggaatgccttttaaccagctggggacgctagcggga
agcaagtactacaacgtggaggcaacttactactatctgcgatgtattcagtcagagatg
ccgttcgagggagcttacgggaacctgaagcgtctctatgacaaggcagccaagatgtac
caccaggtcaagaaacaggaaatgaagaagctgtcccccaccaagcagaggtctaaagac
gttaaacggttgctcgtgagcttcatgtacctgcagagccttcttcagcccaagaacagc
ctgcaggagtctgagctgacgtctctgtgccagtcggtgctggaggacttcaaccttgtg
ctgttctacctgccctctccctcgcactccacctctggctgcgaggaagaggaggatcac
gagagccgctactccttcatccccgacgtgctcgtcttcagaatggttgtcacctgcctg
atggtcgtgcacaacctcaagagagcaggctccaagcagtacagcgctgccatcgccttc
acactggccatgttctctcacctggtcaaccacgtgaacatccacctgcaggctgagctg
gaggaaggagagagcggagtcccggtgctgcacacggatgacctggaagtgaaagacggc
gtgacattgacgccggaggaaggcacgctacagaacgggatggctgaggaagaggaggag
gaggaagaggaggaggaggaggaggaggaggaggaggaagagagaagtgggaaaggagca
gacggtctaaagaagccttcgaactcaacggacaaaaccaagaagatgggcaaaaagaaa
tactcccgtctctcccgcctgagacggcgccgatacgccgggaaagaggacgagagtgat
ctgagtgagggctttgagagcgagggggagagagggggaagagcagggggcaggagagtg
ggagcagcggtcgtctccaccgccattaccagggcgaaacacaaggggacggactgggag
agtggctctgagaggagcgaggaagactacgaagaggaggaggcggagactgcgttcgac
gtggaaacagattcggatatgaacagccaggagtcgcgctctgatttggaagacatcgaa
gacgaaaaaacggagctcgcaggcgtgcccgatacactcgacagcgcggattcaaaaccg
ctggagaaggcggagcccagcccggctgtcaatgggccctccccacccagcggcagcgac
tccagcatcgccagtaacctccaggccatgtcttcccagctctttcagaccaaacgctgc
ttccgcttggcccccactttcagcaatgtgctgctgcgaccctgcagtgctccagaggcc
agcgggggagggagcagcccccagccaacagccctcgatcagacccctctcgccagcagc
aatcccagcgccaccccccacactgccagcgacaacggtgaggcttctgcgtaa
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