KEGG   Polyodon spathula (Mississippi paddlefish): 121307061
Entry
121307061         CDS       T07273                                 
Name
(RefSeq) roquin-2-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pspa03000]
    121307061
   04121 Ubiquitin system [BR:pspa04121]
    121307061
Transcription factors [BR:pspa03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    121307061
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121307061
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-CCCH zf-RING_2 Prok-RING_4 zf-CCCH_4 zf-C3HC4_3 zf-C3HC4_4 zf_CCCH_4 zf-C3HC4 zf-C3HC4_2 zf-RING_10 zf-CCCH_2 zf-RING_4
Other DBs
NCBI-GeneID: 121307061
NCBI-ProteinID: XP_041095091
LinkDB
Position
52:complement(1956686..2003404)
AA seq 1172 aa
MPVQAAQWTEFLSCPICYNEFDESKHKPISLGCSHTVCKTCLNKLQRKACPFDQTVLNTD
IDALPVNFALLQLVGAQVPDQQTVHLSNVAESKHYEAAKKCVEELALYLKPLSGGKGVAS
LSQSALSRPMQRKLVTLVTCQLVEEEGRLRALRAARSLGERTVTELILQHQSPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLSPHLELLANI
DHNPDAAPPTWEQLEDVMAAVKTVVHGLVDFIQNFSKKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGANCTFAHAQEELEKYRMRNKKISASVRPFPVSQVLLGNVGVNSTTATTVSGS
TESMGEMIHSTNGVHRESSEPQLIPRGADSPLDELKKLARGGSSGLTAPCCLAESPPESK
MLSPCKTPVNPGTATSTVPPSREASMNSVHSNPGQFVSRVSLCPRQQSDVYYLNPQTAVS
NNAPPSQTKNYYAPPPPPPSVSVSTRFVRSSNVPESSLPPPSVPYTDQYPSFPPRGRMTS
SPCPPPPPQQYSYPAVHSGMYAPVYDSRRMWRPQMYHRDDVRSSSLPPMDVVHSSIYQPP
LRERYSSLDGYYSVAGQAASEQRAVPLQRDSCNRMAVGYDELFRRKPDQWTQCHSQKPPL
VSPALPLTAQSPSPSSPHFNVDFSTEFSSDFVGSKYKEDNRLSHYSPWSCGTIGTCIHAV
DSEPKDVVANSSVELTDHNSGDIKRRTHLFEPQRRLRDEDPIIPFGEGPIISKWGAISRS
SRTGYHTTDPIQATASQGSTTKPINFRDYGPYINHSDSRWSSYESDSSAPSNYMKRDQLR
VSGLTAKDSCNRDHLSTELQQAASNSLLLQKEANALATQQKWASLEDELSFSLIGSKIAL
RNTETGFTEDSVDSKPDRDIELELSALDADEPDAQDEEIEEALSHQLCISSHNDKRSNGT
VAGNGHQTIQQDRVTSDKVGNHILKQIAINKKQRVIQPMTWCFSKAMTPAGGVSSSASVT
SALSISKLVLKTATQGDLTKPATNGEMLLNGS
NT seq 3519 nt   +upstreamnt  +downstreamnt
atgcctgtgcaggcggcacaatggacagagtttttatcttgtccaatctgctacaatgag
tttgacgagagcaagcacaagccgatcagtctggggtgttcacacacagtctgcaagacc
tgcctcaacaaactgcaacgcaaggcatgtccctttgaccagactgtcctcaacacagac
atcgacgcccttcctgtcaactttgcactgctccagctagtgggtgcccaggtaccagac
cagcagacggtacatttaagtaatgtggcagaaagtaaacattatgaggctgcaaagaag
tgtgttgaggaactggcgctctacttgaagcctctaagtggaggaaagggagttgcgagc
ctgagtcagagcgcgctgagtcggccgatgcagaggaagctggtgacgctggtgacctgt
cagctggtggaggaggagggccgattgcgagcgctgagagccgcaaggtcgctgggggag
aggactgtcaccgagctcatcctgcagcaccagagccctcagcagctctctgcaaacctg
tgggccgctgtccgggctcggggctgccagttcctggggccagctatgcaggaagatgca
ctgaagctggttctccttgcattggaagatggctcggccctttccaggaaagtgttggtc
ctctttgttgttcagaagctggaggctcgattccctcaggcatccaaaaccagcatcggc
cacgttgtgcagcttctctaccgtgcttcctgctttaaggtcaccaaaagggatgaagac
tcttctttgatgcagctaaaagaggagtttcggacttacgaggctttgcgcagggagcac
gatgcacagatagttcacattgccatggaagctgggcttcgcatctctcctgaacagtgg
tcttcccttctgtatggtgatctggcacacaagtcacatatgcagtctattattgataaa
ctccagtcaccagaatcttttgcaaagagtgttcaggaactgacaatagtcctgcagcgg
acaggagatccagctaacttaaaccgactaagccctcacctggaacttttagctaacatt
gaccataacccagatgctgcacccccaacttgggaacagctggaagatgtcatggcggct
gtgaagacagtcgttcatggacttgtggatttcatccagaacttcagcaaaaagggtcat
gaaacaccccagccacaaccaaacagcaaatacaaaaccagtatgtgtcgagacctgagg
cagcaaggaggctgtccacgtggagccaactgtacgtttgcccacgcccaggaggagctg
gagaaataccgaatgaggaataaaaagatcagtgcgtctgtcaggccctttcctgtgtct
caggttctcctcggtaatgttggagtgaacagcaccacagcaactactgtgtctggaagt
acagaaagcatgggggaaatgatccacagtaccaatggggttcacagagaaagcagcgag
cctcagcttattccacgaggggctgactctccacttgacgagctgaagaaacttgccagg
ggaggctccagcggcctgactgctccctgctgtcttgcagaatcccctcctgaaagtaag
atgctctcaccttgtaagactcctgtaaaccctggcacagctacctcaactgttcctccc
tctcgtgaagccagtatgaattcagtacattctaaccctggccagtttgtgtcccgggta
tctttgtgcccccgtcagcaatctgatgtgtattacctcaacccgcagacagcggtgtcc
aacaatgcaccaccatcccaaacaaagaactactatgctcctccacctcctccccctagt
gtttcagtttctacgcgttttgtccgttccagcaatgttcctgaatcatctctccctccc
ccatcagtgccctacacagaccagtacccatcgtttccaccgcgggggagaatgacgtct
tctccctgccccccgcctccccctcagcagtatagctaccctgcagtgcactctgggatg
tacgctcccgtgtacgacagccggcgcatgtggaggcctcagatgtaccaccgcgacgac
gttcgaagcagctctttaccccccatggatgtggtgcactcgtcaatctaccagcctcct
ctcagagagagatacagctctctcgatggatactactctgtggctggccaggcagcaagt
gagcagagagccgtgcctttgcaaagggactcatgcaaccgaatggctgttggttacgat
gagctgttcaggaggaaaccagaccagtggacccagtgccacagtcagaagcctccactt
gtctctccagccctccctctcaccgcacagtccccctcaccttcctccccgcacttcaat
gtggacttcagcactgagttttctagtgactttgtgggctctaaatataaggaggataac
cgtctgtcccactattctccctggtcctgtggcactatcggcacatgcattcatgctgtc
gattccgaaccaaaagatgttgtggccaattccagtgtggaattaacagatcacaacagc
ggtgacatcaaaagacgaacgcacctgtttgaacctcagagaaggctgagagatgaggat
cctataattccttttggtgaaggccccatcatctccaagtggggtgcaatttccaggtct
tcccgtacaggctatcacaccactgacccgatccaagctactgcttcccaaggaagtacc
acaaagccaatcaatttcagagactacggcccctatattaatcacagtgattccaggtgg
agctcgtatgaatcggattcatcagctccttctaattatatgaaaagggatcagctacga
gtctcgggtcttactgctaaggattcttgtaacagagaccacttaagcacagagctacag
caggccgccagcaattctctgttacttcagaaagaagccaatgctttagccacgcagcag
aagtgggcatcactggaagatgagctttccttcagcctcataggcagtaaaatagctctc
agaaacactgagactggctttacagaagattcagtggactccaagccagatagagacatt
gaactagagctttcagctcttgatgctgatgaacccgatgctcaagatgaggaaatagag
gaggctctttcacaccagctgtgtatcagttctcacaatgataaacgttccaatggaact
gttgctggtaatggacaccagacgattcaacaagacagagttacatcagataaagtgggg
aatcatatactgaaacaaattgcaatcaataaaaaacaaagagttatccaacccatgacc
tggtgtttcagcaaggcgatgacccctgcaggtggagtcagctcctcggcttcagtcacg
tctgcgctcagcatcagcaaactggtcctgaaaacagcaacacagggagatctgactaaa
cccgccaccaatggagagatgctccttaatggaagctga

DBGET integrated database retrieval system