Polyodon spathula (Mississippi paddlefish): 121307117
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Entry
121307117 CDS
T07273
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121307117 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121307117 (smarcc2)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121307117 (smarcc2)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121307117 (smarcc2)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121307117 (smarcc2)
PBAF complex
121307117 (smarcc2)
GBAF(ncBAF) complex
121307117 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
CD99L2
Motif
Other DBs
NCBI-GeneID:
121307117
NCBI-ProteinID:
XP_041095179
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All DBs
Position
53:complement(958808..980151)
Genome browser
AA seq
980 aa
AA seq
DB search
FGKHVSNAPLTKLPIKCFLDFKSGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRNVEM
FMTIEKSLVQNNCLARPNIYLSPDIEPKLLSKMKDIIKRHQGSVTDDKNNSTHTVVPMPG
SLEEEEWVRPVMSRDKQVLLHWGYYPDSYDTWIPASEVEAVVEEPPSVEKPRKVHTKWIL
DLDIFNEWMTEEDYEVSEAPRRKHLSAKTLMDEVSTPDLERRDKRPPGNSKKRKRSPSPT
PAPAPESKKKNTKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTK
KDSESAPVKGGTMTDLDEQEDDATETAGKDEEESSAGNKGEQTKNPDLHEDNVTEQTHHI
IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST
ACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPL
QPKTPQATASQQVLSFPDKAKEKPVELQNFGLRTDMYAKKSVPSKSKSAASATREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDECILNFLRLPIEDPYLEDSDASLGPLAFQPVP
FSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVKKVEDAARV
TGKQNPLFGLESSGIAGTSLDEPERMDETTEEAKSDSQPSEEKREPKESREGVSDEEGKE
KPVEGDKKDEERGKEGETEEGEQADSEMGDGEKEKEQKEGAEEGMREGESEGEKTNKMER
DVGEGNLATAAASALASAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQIQHQQQSQPPSQPPPASQ
PAPQPGPPAPGAQGPSAPPPGPQPAEQQPTTPPRRTPPLPLTPAGAQLSTPTSLPHEPSV
TMPPDSLPPAPASATPVPPQ
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
tttgggaagcacgtcagcaacgcgccactcaccaaactaccgataaagtgtttcctggat
ttcaagtccggtgggtcgctgtgtcacatcctggcagcagcatacaagttcaagagtgac
cagggatggaggaggtttgatttccagaacccgtctcgaatggaccgcaatgtggagatg
ttcatgactatcgagaagtcactggtgcagaacaactgcctggctcggcccaatatctac
ctgagcccagacatcgagcccaaactgctgagcaagatgaaggacattatcaagagacat
cagggctcagtgacagacgacaagaataacagcacccacactgtggtgcctatgccaggg
agtctggaggaagaggaatgggttcgtccagtcatgagcagagacaagcaggtcctgctg
cactggggatactaccctgacagttacgacacgtggatccctgccagcgaggtggaggct
gttgtagaggaaccgcccagcgtggagaaacccaggaaggtgcacaccaagtggatcctg
gatctcgacatcttcaacgagtggatgacggaggaggattacgaggtgagcgaggccccc
cgacgcaagcacctctccgccaagaccctgatggacgaggtgagcacccccgacctggag
cgccgggacaagaggccccccggaaactccaagaagaggaagcgctcgccctctcccacc
cccgcccccgcccccgagagcaagaagaagaacaccaagaaaggtccctccactccctac
accaagtcgaagcgcggacaccgcgaggaggagcaggaggacctgaccaaggacatggac
gagccctcgccagtgcccaacgtggaggaggtgaccctgcccaagacagtgaacacgaaa
aaggattcagagtcggctccagtgaagggaggcaccatgacagacctggacgagcaagag
gatgacgcgacggagactgcaggcaaggatgaggaggagagctctgcaggtaataaaggg
gagcagaccaagaaccccgacctgcacgaagacaacgtgacggagcagacccaccacatc
atcatccccagctacgcagcctggttcgattataacagtgtccacgccatcgagcgcaga
gccttgccagagttcttcaatggcaagaacaagtccaagactcctgagatttacctggcc
tatcgaaacttcatgatcgacacgtaccgcctcaacccccaggagtacctcacctccact
gcctgccgacgcaacctggctggggacgtgtgtgccatcatgagggtgcatgcgtttctg
gagcagtggggtttgatcaactatcaggtggatgctgagagccgccccacccccatgggc
cctccccccacctcacacttccacgtgctggcagacaccccctccggcctggtgcccctg
cagcccaaaacaccacaggccactgcctcccagcaggtgctcagcttccctgacaaggcc
aaggagaagccagtggagctgcagaacttcggcctgcgcaccgacatgtacgccaagaag
agcgtgccctccaagagtaaaagtgcggccagcgcaacccgggagtggacagagcaggaa
actctactgctgctggaggctctggagatgtacaaggacgactggaacaaggtgtcggag
cacgtgggcagccgcacacaggacgagtgcatcctcaacttcctgcggctgcccatcgag
gacccctacctggaggactcggacgcctcgctggggcccctggccttccagcccgtcccg
ttcagccagtctgggaaccccgtcatgagcaccgtggccttccttgcctccgtcgtggac
cccagagtggcctccgccgcggccaagtccgccctggaggagttctcgaggatgaaggag
gaggtcccggccgcgctggtcgaggctcatgtgaagaaagtggaggacgcggcgcgtgtc
accgggaaacaaaaccccctgttcggactggagagcagcggcatcgcggggaccagcctg
gatgagcccgagaggatggacgagacaaccgaggaggctaagagtgacagccagccatca
gaggaaaagagggagcccaaggaaagtcgagagggtgtgtcagatgaagaagggaaagag
aagccggtggagggcgataagaaggatgaggagagagggaaggagggagagacagaggag
ggagagcaagcagactcggagatgggtgatggagagaaggagaaggagcagaaggaggga
gcggaggaggggatgagagagggggagagtgagggagagaagaccaacaagatggagcga
gatgtgggggaggggaacctcgccacggctgcagcctcggcactggcttctgctgcagtg
aaggccaagcacctggctgcagtggaggagaggaagatcaagtccctggtagctctgctg
gttgagactcagatgaagaagctggagatcaagctgaggcacttcgaggagctggagacc
atcatggaccgcgagcgcgaggcgctcgagtaccagcggcagcagctgctagctgaccgg
caggctttccacatggagcagctgaagtacgcagagatgagagcccgacagcagcacttc
caacagattcagcaccagcagcagagccagcctccgagccagccccctcccgctagccag
cctgccccccagccagggcccccggcccccggagcacagggccccagtgcacccccgccc
ggcccccagccagccgagcagcaacccaccacccctccccggcgcacgccccccctgcct
ctcacccctgcaggggcacagctttccacgcccaccagcctgccacacgagcccagtgtc
accatgcctccagactcgctgcctccagccccagcctcggccacgcctgtgcctccccaa
tga
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