KEGG   Polyodon spathula (Mississippi paddlefish): 121307118
Entry
121307118         CDS       T07273                                 
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137  Mitophagy - animal
pspa04144  Endocytosis
pspa04145  Phagosome
pspa04148  Efferocytosis
pspa05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121307118
   04145 Phagosome
    121307118
   04137 Mitophagy - animal
    121307118
   04148 Efferocytosis
    121307118
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121307118
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pspa04131]
    121307118
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121307118
   04031 GTP-binding proteins [BR:pspa04031]
    121307118
Membrane trafficking [BR:pspa04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    121307118
 Endosome - Lysosome transport
    121307118
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121307118
  Exosomal proteins of other body fluids (saliva and urine)
   121307118
  Exosomal proteins of colorectal cancer cells
   121307118
  Exosomal proteins of melanoma cells
   121307118
GTP-binding proteins [BR:pspa04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    121307118
SSDB
Motif
Pfam: Ras Roc Arf Gtr1_RagA MMR_HSR1 GTP_EFTU RsgA_GTPase AAA_16 SDR-like
Other DBs
NCBI-GeneID: 121307118
NCBI-ProteinID: XP_041095180
LinkDB
Position
53:complement(988084..994046)
AA seq 188 aa
MAGRAASRPNGQSQATKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITNQETFARAKTWVKELQR
QASPSIVIALSGNKADLSSKRAVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIGET
PAPIHSYY
NT seq 567 nt   +upstreamnt  +downstreamnt
atggcaggccgcgcagcttcccggcccaatggccagtctcaggctactaagatctgccag
ttcaaactggtgctgctgggagagtcggccgtgggcaagtccagcctggtgctgcggttc
gtgaaggggcagttccacgagtaccaggagagcaccatcggggccgcgttcctgactcag
tcggtgtgtctggatgataccacagtgaagtttgagatctgggacacggcaggccaggag
agataccacagcctggcaccaatgtactaccgcggggctcaggctgccatcgtggtgttc
gacatcaccaaccaggaaacgtttgcacgagcaaagacttgggtgaaagagctgcagaga
caagccagccccagcattgtgatcgcactgtctggaaacaaggcggacctgtccagcaag
agggcagtggaatatgaggaagcacaagcctatgctgatgacaacagtctgctcttcatg
gaaacatcagccaagactgccatgaacgtcaacgacctcttcctggcaataggtgagaca
ccagcaccaatccactcttactactga

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