Polyodon spathula (Mississippi paddlefish): 121307142
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Entry
121307142 CDS
T07273
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121307142
04518 Integrin signaling
121307142
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121307142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121307142
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121307142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
121307142
NCBI-ProteinID:
XP_041095208
LinkDB
All DBs
Position
53:complement(45023..>68097)
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AA seq
903 aa
AA seq
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PLFFIPPQTRVLVVPPPAGSCTQDGQSYSDKDVWKPEPCRICVCDTGTILCDEIICEDIK
DCPNPEIPFGECCPICPAGETSPGEQPGRKGQKGEPGDITDVVGPRGPGGPMGPPGEQGP
RGERGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAGGFDEKAGG
AQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPLGPRGPPGPSGKPGE
DGEAGKPGKSGERGSPGPQGARGFPGTPGLPGIKGHRGYPGLDGVKGEAGAAGAKGEAGS
PGENGAPGPMGPRGLPGERGRNGPAGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGSPGS
KGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF
PGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEHGPKGELGPAGPQGAPGPAGEEGKRGA
RGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGQPGVGGPKGANGDPGRPGE
PGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE
PGKAGEKGLVGPPGLRGLSGKDGETGAAGPPGPSGPAGERGEQGPPGPSGFQGLPGPPGP
PGEGGKPGDQGVPSEAGAAGRAGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA
TGPSGAVGAQGPPGLQGMPGERGASGISGAKGDRGDVGEKGPEGASGKDGSRGLTGPIGP
PGPAGPNGEKGESGPSGPPGAAGTRGAPGDRGENGPPGPAGFAGPPGADGQPGAKGEQGE
GGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPNVR
KHL
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
cctctctttttcatcccccctcaaacccgtgtgcttgtcgtgcctccgccagctggcagc
tgcacacaggacgggcagagctatagcgataaggatgtgtggaagcccgagccgtgtcga
atctgtgtgtgcgacaccgggaccatcctctgcgacgagataatctgcgaggacattaaa
gactgccctaacccagaaatacctttcggagaatgctgccccatctgccccgccggcgag
acctcccccggtgagcaacctggccgtaagggacagaagggtgaaccaggagatataaca
gatgttgtaggaccaagaggaccgggaggcccaatgggacctccaggagaacaaggacca
agaggcgagagaggagacaaaggtgacaaaggcagtcccggccctcgcggcagagatggt
gaacccggcactcctggcaaccccggaccccctggaccacccggacccaacggtccccct
ggccttggcggaaactttgctgctcagatggcaggaggttttgatgagaaagctggtggt
gctcaaatgggcgtgatgcaaggaccaatgggccccatgggtccccgagggccacccggc
cccactggcgctcctggcccacaaggtttccaaggcaaccccggagagcctggtgaaccc
ggagctgctggtccccttggtccccgtggtccccctggaccttctggcaagcctggtgaa
gatggtgaagctggcaagcctggtaaatctggagagcgtggctcacctgggccccagggt
gcacgtggtttcccaggaacccctggactccccgggatcaaaggacacagaggttaccca
ggtctagacggggtgaagggagaggctggagctgcaggcgcaaagggtgaagctggttct
cctggtgagaatggcgctcccggtcccatgggtccacgcggtctccccggcgagagaggg
cgtaatggacctgctggtgctgctggtgctcgtggtaacgatggtctgcctggtcccgct
ggtcctcctggccccgtgggtcccgccggtgctccaggcttccccggatctccaggttct
aagggtgaagctggtcccacaggtgctcgtggtcctgagggagctcagggcccaagaggc
gagtccggtacccccggctctccgggccccgccggcgcttctggtaaccctggtactgat
gggatccccggagctaaaggttcagctggtgctcctggtattgctggtgctcctggcttc
cctggaccacgtggaccccctggacctcagggtgcaactgggcctcttgggccaaaaggt
caacagggtgaccccggtattccaggattcaagggtgaacacggtcccaaaggcgagctc
ggccctgctggtcctcaaggtgcccccggcccggctggagaggaaggaaagagaggcgcc
cgaggagagcctggcgctgccggcccactcggaccccccggagagagaggtgctcccggt
aaccgtggtttcccaggtcaagatggtcttgcaggtcccaagggtgcccctggcgagcgt
ggtcagcccggtgttggcggtcccaaaggtgccaacggtgatcccggccgccccggagag
cctggcctgcccggtgccagaggtcttactggtcgccctggtgatgctggtcctcaaggc
aaaggtggtccatctggtgccgctggtgaggatggtagaccaggaccccctggcccccag
ggtgcccgcggtcagcctggtgttatgggattccccggacctaaaggagccaacggtgag
cccggaaaggctggcgagaagggattggttggccctccaggtctaagaggtctgtccggt
aaagacggagagacaggcgctgcaggacccccaggcccgtctggcccagctggcgagaga
ggagagcaaggtcccccaggaccttctggattccagggtctgcccggacctcccggcccc
ccaggtgaaggtggcaagccaggtgaccagggtgttccctcagaagctggtgcagcaggc
agagctggtcccagaggcgagcgtggtttccctggcgagcgtggatctccaggtgctcag
ggtcttcagggaccccgaggtctgccaggaactcccggaactgacggccccaagggtgcg
actggcccatctggtgcagtaggagcccagggaccccccggcctgcagggaatgcccggt
gagagaggcgcttcggggatctccggagccaagggtgacagaggtgacgttggtgagaag
ggacccgagggagcttccggtaaagacggttcacgaggtctgaccggtcctattggtcca
cccggcccagctggtcctaatggagagaagggtgaatctggtccctctggccctcctgga
gcagctggaacccgcggtgcccctggtgatcgtggtgagaatggtccccctgggcctgct
ggattcgctggtccccctggtgctgatggccagcctggtgctaaaggagagcaaggagaa
ggtggacagaagggagatgcaggtgccccaggcccacagggtccttctggagctcctggc
ccacagggcccaactggcgtgtccggacctaaaggtgcccgcggtgcccagggacctcct
ggtgcaactggtttccctggtgctgctggcagagttggtcctcctggccccaacgtaaga
aaacatttgtga
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