Polyodon spathula (Mississippi paddlefish): 121307171
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Entry
121307171 CDS
T07273
Symbol
hoxc5a
Name
(RefSeq) homeobox protein Hox-C5a isoform X1
KO
K09305
homeobox protein HoxA/B/C5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121307171 (hoxc5a)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
121307171 (hoxc5a)
SSDB
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GFIT
Motif
Pfam:
Homeodomain
DUF1842
Motif
Other DBs
NCBI-GeneID:
121307171
NCBI-ProteinID:
XP_041095244
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Position
53:344896..347968
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AA seq
227 aa
AA seq
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MSSYATDSFYKQAAQQPSAYSMQSSGNYGCATELSASRYCYGGLDLTLPFPASTPANSYC
RGEMGTTLRGCDPEDRASPCTETAASPRLTPGSDGHRIYSKAERQPCIKNSEVTGEIKVE
AIQPAQQRRQQLQHKVDQSPLPQIYPWMTKLHMRHAESDGKRSRTSYTRYQTLELEKEFH
FNRYLTRRRRIEIANSLCLNERQIKIWFQNRRMKWKKDSKLKTKECV
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtacgcaaccgattcattttacaagcaagcagctcagcagccgtctgcttat
tccatgcaaagttccggaaactacggctgcgctactgaactcagtgcctccaggtactgt
tacggtggactcgatctcaccctccctttccctgcctctactcctgcaaactcctactgc
cgcggggagatgggcacgactctgagaggctgcgaccccgaggaccgggcttcaccttgc
acagagaccgcagcgtcccccagactcaccccgggctcggacggacacaggatttactct
aaagcggagagacagccttgtattaaaaacagcgaggtcaccggtgaaatcaaagtggag
gctatacagcccgcacagcagcgaagacaacaactccaacataaagtcgaccagagcccg
ctgcctcagatatacccctggatgaccaagcttcatatgagacacgcagaatcggacggc
aagcgctccaggacaagttacacgcggtaccaaaccctggagctggagaaagaattccat
ttcaaccgctacctgacccgccgcagacgcatcgagatcgccaacagcctgtgtctcaac
gagaggcagataaaaatctggttccagaaccggcggatgaaatggaagaaggattccaaa
ctcaaaaccaaagagtgcgtttga
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