Polyodon spathula (Mississippi paddlefish): 121307227
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Entry
121307227 CDS
T07273
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121307227
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121307227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121307227
04121 Ubiquitin system [BR:
pspa04121
]
121307227
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121307227
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121307227
Spliceosome [BR:
pspa03041
]
Complex B
Other components
Prp19 complex
121307227
Complex C
Prp19-CDC5 complex
121307227
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
U-box type E3
121307227
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
121307227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
Beta-prop_HPS5
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_IFT122_1st
PROPPIN
Beta-prop_Nup120_160
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Ge1_WD40
eIF2A
B-prop_COPA_B_2nd
RMC1_N
Beta-prop_DCAF12
DUF1830
Motif
Other DBs
NCBI-GeneID:
121307227
NCBI-ProteinID:
XP_041095299
LinkDB
All DBs
Position
54:complement(902076..909287)
Genome browser
AA seq
267 aa
AA seq
DB search
MLGGADKNVVVFDKNAEHIIATLKGHSKRVTSVVYHPSQSVVFSASPDATIRIWSVPSQS
CVQVVRAHEGPVTGLSLHATGDYLLSASEDQYWAFSDVQTGRILTKVTDETAGCALTCAQ
FHPDGLIFGTGTLDSQIKIWDLKERTNVANFPGHSGPITTIAFSENGYYLATTADDSSVK
LWDLRKLKNFKTIQLDDNYEVKSLIFDQSGTYLAIGGTDIRIYMCKQWSEVLSFTEHGGV
VTGVAFGQHAQFLTSTGMDRSLRFYSL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgttgggaggcgctgataagaacgtggtcgtatttgataagaatgctgagcacatcatt
gccacgctgaagggccactccaagagagtcaccagcgtggtgtaccacccctcccagtcg
gtggtgttctctgcctctcctgacgccacgattcggatctggtcggttccgtcccagtcc
tgtgttcaggtggttcgggctcacgagggcccggtgacggggctgagccttcacgccaca
ggggactacctgctgagcgcctccgaggaccagtattgggctttctctgatgtgcagacc
ggacgaattcttaccaaggtcactgacgaaaccgctggctgtgcgctgacctgtgcccag
ttccaccccgacggtctcatctttggaactggaaccctggactcacagattaagatctgg
gacttgaaggagcgcacgaacgtggcgaacttccccggccactcgggtcccatcaccacc
atcgccttctctgagaacggatactacctggcaaccacagcggacgactcctccgtgaaa
ctgtgggatctgaggaagctcaagaacttcaagaccattcagctggacgacaactacgag
gtgaaatctctcatctttgatcagagcggcacttacctggctattgggggaacagacatc
cgaatttacatgtgcaagcagtggtctgaggtgctgagtttcacagagcacgggggggtc
gtcactggggtggcgttcggccagcacgcccagttcctcacctccactgggatggatcga
agcctccggttctacagcctgtga
DBGET
integrated database retrieval system
