Polyodon spathula (Mississippi paddlefish): 121307248
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Entry
121307248 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121307248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121307248
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121307248
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121307248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121307248
NCBI-ProteinID:
XP_041095333
LinkDB
All DBs
Position
54:complement(922901..944047)
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AA seq
916 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKVRNLARLAQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDERIEELKGFIEKHRHHICM
LETILRMLDNDSIQVDSIRKIKDDVEYYVDSSQDPDFEENEFLYDDIDLEDIPLPLVATS
PPGVSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEISQSPVK
NGSTSSSTSIPSCGSSAGAVITAGGGGNGSNSSSALFPVGGTGSSSSSSSLLGNIITSSS
LSHTFSTQNPKTASPTTASSSSSSSSSSSSPSHSLNSPSSLMMLSNSAAGGANTNSISTA
MASLGGVGSGIMRSHGSLMSSNMQPGIIGNSGGNGGSGLGLGLGLGLGKSVSGSSLAQLA
GLGLGNITGMGGLSSMGLGGLANPPTPYAQAAASGNVGLIGRSSNSNSNTMMGAPSGGHG
PVGSAPGGGSSNGGSGSSSSSSSSAPGDAAGERERSASSNSTGSFSGIPGRPPSGQKQNG
ATSYSAVVADSSQDSALSSTSQSQSSQPGSHSTPASAVKESVGGSQLSSVTGSSSNSSLL
VQMPINPPSSPSPSFSETKPSQNLLNGPLNYSQPEIKPPEPLTSLKSVAEQAALGSGLEE
QIPSLRLTDRDLFSSSTAPPGGPAVPPQTQLSEVNIPPSLGVCPLGPVPLSKEQLYQQAM
QESAWMHMPHPSDSERIRQYLMRNPCPTPPYHHQVPPPHSDSVEFYQRLSTETLFFIFYY
LEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKK
EGFTFEYRYLEDRDLQ
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagaggaaactgcaaggtgaaatagatagatgtctcaagaaagtcacagaa
ggtgttgaacagtttgaagatatttggcagaaggtaagaaacctggcaaggcttgcccag
aaagaaaagtatgaggctgatctcaaaaaggaaattaaaaaactacagagattacgggac
caaattaagacgtgggtggcatccaatgagataaaagacaagaggcagctagtggagaat
cgaaagttgatagaaacgcaaatggagcgtttcaaggtagtggagcgggagacgaagacc
aaggcctattccaaggaggggctgggcttggctctgaaggtggacccagcacagaaagag
aaggaggaagtggggcagtggctcactaacacgatagacacgctcaacatgcaggtggac
cagtttgagagcgaagtggagtccctgtctgtgcagacgaggaaaaagaaaggagacaaa
gacgagcgcatcgaggagctgaaggggttcattgagaagcaccggcaccacatctgcatg
ctggagacgatcctgcgcatgctggacaacgactccatccaggttgactccatccgcaag
atcaaggacgatgtggaatactacgtggactcctcgcaggatcccgacttcgaggagaac
gagttcctgtacgatgacatcgacctggaagacattcctctgcccctggtggctacctct
cctccgggcgtctctcacatggaggatgaaatattcaaccagtcgagcagcacgcctact
tctacaacttccagctctcccattcctcccagtccagccaactgcaccacggagaactct
gaagacgataagaagcgagggcgttcgacggacagcgaaatcagtcagtccccagtaaag
aacggcagcaccagcagcagtaccagtatccccagttgtggctccagcgctggcgctgtc
atcacagcagggggaggaggaaacggcagcaacagcagtagcgccctgtttcctgtaggg
ggcaccgggagcagcagcagcagcagcagcctgctgggaaacatcatcacctcgagctcc
ctgtcccacactttcagcacccagaaccccaaaacagcaagccccaccacagcctcctcc
tcctcctcctcctcctcctcctcctcctccccctcccactccctcaacagcccctcgtcc
ctcatgatgctctcaaactcggcagcagggggcgccaacaccaacagcatttcaaccgcc
atggccagcctgggtggtgtcggcagcggtatcatgaggtctcacggcagcctcatgtcc
tccaacatgcagccgggcataatcgggaatagcgggggcaacggaggctcgggtctgggt
ctggggttgggtttagggctggggaagtccgtctcgggctccagtctggctcagctggct
ggcctgggtctcggtaacatcacggggatgggcgggttgagctccatgggtttggggggc
ctggccaacccccccacaccctacgcccaggctgccgcctcggggaacgtcggcttgatc
ggcaggagctccaattccaacagtaataccatgatgggggcgccctcgggggggcatggg
cctgttggcagcgcccccggaggcgggagcagtaacggagggtctgggagcagcagcagc
agcagcagctcggcccccggggatgctgctggagagagggagaggagcgccagcagcaac
agcacaggcagcttcagcgggattcccgggaggccacctagtgggcagaaacagaatggc
gccacaagttacagtgcggtggtggctgacagcagccaggactctgccctcagtagcaca
agccaatcacagagcagccagcctggctcacacagcactccagccagtgcagtgaaggaa
agtgtcggtggttcccagttatccagtgtgactggttccagttcaaactccagtttactg
gtccagatgcccatcaaccctcccagctcgcccagccccagtttcagcgagaccaaaccg
agccagaacctgctgaacggacctctgaactactcacagccagagatcaagcctccagaa
ccactgacctctctgaaatcagtggctgaacaagcagctctggggtcaggactggaagag
cagatcccttcactgcgcctcacagaccgagacctgttctccagctccacagcgcccccc
ggtggcccggctgtgcccccgcagacccagctctcggaggtgaacatccctccctcgctg
ggggtgtgtccgctggggccagtgcccctctccaaagaacagctgtaccagcaagccatg
caggagtctgcctggatgcacatgcctcacccctcagactctgagaggatacggcagtac
ctgatgaggaacccctgcccgaccccgccttaccatcaccaggtgcctcctccacactcg
gactctgtggagttctaccagcgcctgtccacagagaccctgttctttatcttctactac
ctggagggtacgaaggctcagtatctagcagctaaagccctgaagaagcagtcctggagg
ttccacaccaagtacatgatgtggtttcagagacacgaagaacccaaaaccatcactgat
gagtttgagcaggggacgtacatttacttcgattatgagaagtgggggcagcgcaagaag
gaggggttcaccttcgaataccggtacctggaagacagggatttacaatga
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