Polyodon spathula (Mississippi paddlefish): 121307275
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Entry
121307275 CDS
T07273
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121307275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121307275
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121307275
mRNA degradation factors
5'-3' decay
Decapping complex
121307275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF6478
Motif
Other DBs
NCBI-GeneID:
121307275
NCBI-ProteinID:
XP_041095385
LinkDB
All DBs
Position
54:556621..574023
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AA seq
782 aa
AA seq
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MFRFQSLEEDCPLEEEREALHGLVDEDDDIDQFNDDTFGSGAIDGDWREEHDRLAELDEK
VGGSPPLQAPPPAAAPAPSSLPHLYSRGLGERGPDSLLLGGDENLAHSLRKLVLSAETDY
RELEDPAIMRAGLQQHKRAPLQPRPQLNSGSIWDNAMGLGGMSIPKPLLSQVQDSPLMSI
IKEVGLPKRPPMGRDERRDLSERAPPPRSTSPVIGSPPVTAVPIGTPPKHPTGHNPSQQI
LCPTPVHVRASMQQRFPGVFNDRMSPNQPLNLANSQLRGHTFPPGVGPVLSQLQRAQMIG
AGQPAHLSPSHFSLNPALLQGRMGAMMSPAVGGGGFRPFFSPSPGPPGHGGRAPQQYGVT
RGDTTHLHPQHRRLLTQRMQQQSGRGQNGAGGDRPQRLGGSQDRRRDPYSNLMTPREKEW
VSRVQMMQLQSTDPYLDDYYYQNYFQKLEKRPSPTDGDAHKREHTKLITPQVAKLEHAYR
PVQFAGSLGKLTVSSVNNPRKMIDTVVMTTRSDDEEKKEKQVWNKRRQILYTVEKTYSLL
LDVQDFERKYLQTPEEERGALLEERRSKLGEMFENLRGKQTDANSHRFSDDHFLQIMRVR
KGKHLVSRLLPFLCMEHAVAVVMATARNLPYIAKKDAHDEVLPWLIEPFSIVIQHLTSGP
LTDLLQDLTGLPGGPSELNSYTGNQQQAQSHTSTGQLGKVLLSKFGVTLLYLILSQGERL
MSGDSNSELAENNRWTDLVFGVTLELLKTPTASLAQPAFTPPALLSFFSRYVDRQKLNLL
QD
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtctctggaggaagactgccccctagaggaagaaagggaggcgctg
cacggcttagtcgatgaagacgatgatatcgaccagttcaacgatgatactttcgggtcg
ggagccatcgatggggactggagggaagaacacgaccgattggctgagctggatgagaag
gtgggtgggtctccccctctgcaggcccctcctcctgctgctgctcccgccccctcctcg
ttacctcatctctactcgagggggctgggggagagagggccggacagtctgctgctggga
ggggatgagaacctggcccacagcctgaggaagctggtgctgagcgcagagacagactac
agggaactggaggacccggccatcatgagagccgggctgcagcagcacaagagggcgccc
ctgcagcccagaccccagttgaactctggcagtatctgggacaacgcgatgggactggga
ggaatgagcattcccaaaccgttactgtcgcaggtccaggacagccccctcatgtcaatc
atcaaagaggtggggcttcccaagaggccaccaatgggacgggacgagaggagggacttg
tctgagcgagccccgcccccgcgctccacctcgcccgtgattggcagcccgccggtgacg
gcagtacccatcggaactccgcccaagcatccgactggtcacaatcccagccagcagatt
ctctgtcccacgcctgtgcatgtccgagcctctatgcaacaaagatttcccggggttttc
aacgaccggatgtctcccaatcagcctctcaaccttgcaaattcccagctgcgtggccac
accttccctccgggcgtcggccctgtcctcagccagctacagcgagcgcagatgattgga
gcgggccagcctgcccatctctctcccagccacttctccctcaaccccgcgctgctgcaa
ggcaggatgggagcgatgatgtcaccggcggtgggcggcggggggttccgacccttcttc
agtccctccccgggacccccggggcacggcggcagggccccccagcagtacggcgtgacg
aggggggacaccacacacctgcacccacagcatcggcgcctgctgacccagagaatgcag
cagcaatcggggaggggtcagaacggagccggtggggacaggccacagcggctcggaggg
tcccaggacaggcgacgagacccctacagcaatctgatgacgccgcgggagaaggagtgg
gtgtcccgcgttcagatgatgcagctgcagagcacggacccctacctggacgactactac
taccagaattattttcagaagttagagaagcgaccctctccgacggacggagacgctcac
aagagagaacacacgaaactcatcacgccccaagtggccaaactggagcacgcgtaccga
ccagtgcagttcgcagggtcgctcggaaagctcaccgtctccagcgtcaataacccgcgc
aagatgattgacactgtggtcatgacgacgcgttccgacgacgaggaaaagaaagagaaa
caagtctggaacaaacgcagacagattctgtacactgtggagaagacgtacagcctcctg
cttgatgttcaagactttgagaggaagtacctccagactccagaggaggagaggggggcg
ttgctggaggagcgccgctccaaactgggggagatgtttgagaatctgcgagggaagcag
accgacgccaacagccacagattctcggacgatcacttccttcagatcatgcgagtccgg
aaagggaagcacctggtttccaggctcctccccttcctgtgcatggagcacgctgtggcg
gtcgtcatggcgacggcccgcaacctgccctacatcgccaagaaagacgcgcatgacgag
gtgctgccctggctgatagagcccttctctatagtcatccagcacttgaccagcggtccg
ctgactgacttgttacaagatctcactggcctaccgggggggccctccgagctgaacagc
tataccgggaaccagcagcaagcccagtcgcacaccagtacagggcaactgggcaaagtg
ctgctcagcaagtttggcgtcaccctactctatctgattctcagtcaaggagagaggctc
atgagcggcgactcaaactcggagctcgccgagaacaacagatggacggacctggtgttc
ggagtgactctggagctgctgaagaccccgacggcctctctggctcagccagccttcacc
ccccctgccctgctgtccttcttctctcgctatgtggaccgacagaaactgaacctgctt
caggattaa
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