Polyodon spathula (Mississippi paddlefish): 121307389
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Entry
121307389 CDS
T07273
Name
(RefSeq) heterogeneous nuclear ribonucleoproteins C1/C2-like isoform X1
KO
K12884
heterogeneous nuclear ribonucleoprotein C1/C2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121307389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121307389
Spliceosome [BR:
pspa03041
]
Common components
Common spliceosomal components
hnRNP proteins
121307389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DUF6426
Motif
Other DBs
NCBI-GeneID:
121307389
NCBI-ProteinID:
XP_041095529
LinkDB
All DBs
Position
55:1402195..1420449
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AA seq
340 aa
AA seq
DB search
MDLSPNSLMAGNVTNKNDPRSLNSRVFIGNLNTLLVTKADVEAIFSKYGKVVGCSVHKGF
AFVQFLNERTARAAVAGEDGRMIVGQVLDINLACEPKPHRSKSGKRSAGDMYGSSFDLDY
DFQRDYYDRMYSYPSRVPPPPPPPLSRPVIPSKRPRVSASGGGRRTKSSFSSKGSQRSSS
RSSEYQHRSSAVAELLGKTSGKITYQDTNARRAVPAVKADDLQTIKKELTQIKHKVDYLL
ESLERMEKDHGKKSDTKSSKPDEPQPQHSSSSSSSKKEEAVKMQSEVVGDSDDDEGDLLD
DEDEVKSRGGREEEENDEEEDREQEEGEDDGDSANGDDDS
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggatctgtccccaaacagcctgatggcaggcaatgtaaccaacaagaacgaccctcgc
tccctgaactcccgcgtgttcatcggaaacctcaacaccctgctggtgaccaaggcggac
gtggaggccatcttcagcaagtacggcaaggtcgtgggctgctccgtgcacaagggcttc
gccttcgtgcagttcctgaacgagaggaccgcgcgtgccgccgtggctggggaggacggc
cgcatgatcgtggggcaggtgctggatattaacttggcatgtgaacccaaacctcatcga
tcgaagtctgggaaacgttcagctggagacatgtatggttcttcgtttgatctggattat
gattttcagagagactactacgacaggatgtactcgtacccctctcgcgtccctccccct
ccccctcctcccctgtccaggccggtgatcccatccaagaggccacgggtcagcgctagt
gggggcggccgtcgcaccaagagcagcttctcctccaagggcagccagcgcagctcctcg
cgcagcagtgagtatcaacacaggagcagcgctgttgctgagttgctggggaaaacgagt
ggtaaaatcacttaccaagacacgaatgcgagaagagccgttccagcagtgaaagctgat
gacctgcagaccattaagaaggagctgactcagattaaacacaaggtggattatctgctc
gagagcctggagaggatggagaaagaccacggcaagaagtcggatacgaagagcagcaag
ccggatgagccacagccccagcacagcagcagcagcagcagctccaagaaggaggaggca
gtgaagatgcagagcgaggtggtgggagactcggacgacgatgaaggggacctgctcgac
gacgaggacgaggtgaagagtcgtggcgggcgcgaggaagaagagaacgatgaagaggaa
gaccgggagcaggaggaaggggaggatgatggggacagtgctaacggagatgatgactct
taa
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