Polyodon spathula (Mississippi paddlefish): 121307428
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Entry
121307428 CDS
T07273
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121307428 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121307428 (chd8)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121307428 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
MUN
Motif
Other DBs
NCBI-GeneID:
121307428
NCBI-ProteinID:
XP_041095568
LinkDB
All DBs
Position
55:complement(608065..657340)
Genome browser
AA seq
2542 aa
AA seq
DB search
MADPMMDLFDDPNLFNLDPLPDDTFTQSSSDPIDDALRLAFGQVTTPPPPPQHGAQASQP
QQAAQTTQPYLSLHDYSGQTKQAVLQAPPATTAVTATASKDPTLLGASVAVPVSTSTLTT
VVRMPSAGLKTIAASSNQAHSQTVPKIVILKAPATSGAVTSQGQIHMVTTSSAGNNGGKV
MLGKVLTGTPLRPGVSIVSGGTVLTTAATGNAKGSLVNAGAGGAGVQRVVQTSNGPVKQV
LLQAVQTQQTQQQQLQPGQVQGSSATLKAPGITLTSIPQGESKRITLVLQQPQQGGSVSG
LAGGQRFILGGLPGKIVLQGNQLAALTQARNSAQGGAGAGGQPKVVTIQLQVQQQPNCNT
KLQLVSPSGGQQQVLQFSQGQGQVQGQRLAVPLKLLLQPQAGSSQGSVSVVKVSNMSEAQ
SSAGDQSPTPCPARGPETRRLEHQRKQEKANRIVAEAIARAKARGEQNIPRVLNQDELPS
LAAGGAAAAGPGGEDGAGEEGATGKKKSSKKRSSGAASGTAREEGKQTTKKSKTAGSSGA
AGPGSKAKGKVKANTITPVAGKKRKRIGSSDNSDGELTPPTSPRGEEDESAKRRSNRQVK
RRKYTEDLDIKITDDEEEEEDVDVTGPVKQEPITEPQAEGGDGVPTMQFFVEDPNEEDAT
IVDKILSMRLTKKEICQGQYTTVEEFFVKYKNYSYLHCEWASLEQLERDKRINQKLKRFK
TKVAQMRHLFHEDEDPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWE
LQEDVDQGKVEEFRKIQGRQPNLKRVPRPAASAWKKLELSREYKHGNCLREYQLEGVNWL
LFNWYNKQNCILADEMGLGKTIQSISLLQEVYSAGLHGPFLIIAPLSTITNWEREFQTWT
DMNTIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMVLSDCPELREIEW
RCVIIDEAHRLKNRNCKLLDSLKHLDLEHKVLLTGTPLQNTVEELFSLLNFLEPSQFPSE
TEFLKDFGDLKTEEQVQKLQALLKPMMLRRLKEDVEKKLVPKQETIIEVELTNIQKKYYR
AILERNFSFLSKGPGQSNNVPNLLNTMMELRKCCNHPYLITGAEEKILSDLREVYDPLAL
DFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDG
RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA
RCHRIGQSKAVKVYRLITRNSYERDMFDKASLKLGLDKAVLQSMSGKENNANGIQQFSKK
EIEDLLRKGAYAAVMDEEDEGSKFCEEDIDQILQRRATTITIESEGKGSTFAKASFVASE
NRTDISLDDPNFWQKWAKKADLDMDTINRKNTLVIDTPRVRKQTRQFSTLKDDDPVEFSD
LDSEEERPRSRRHERHHGYGRTDCFRVEKHLLVYGWGRWQDILSHGRFKRRLSERDVETI
CRTVLVYCLLHYRGDENIKGFIWDLITPSESGQAKELQNHSGLSIPVPRGRKGKKVKAQS
TFDVHKAEWIRQYNPDSLFMDDSYKKHLKHQCNKVLLRVRMLYYLKQEVIGDQAERVLGG
ADARQIGIWFPEVDQLELPARWWDAEADKSLLIGVFKHGYEKYNTMRADPSLCFLERVGR
PDEKAIETEQRGGDNFGDLGEGGDFDKYTEDPEYKPIQGMSKEQDEEGDSMMLDEEISVV
DGDEGHMAQTGAVYWPAGSALTARLRRLITAYQRSYRREQLKMEAAEKGDRRRRRCEAAY
KLKEIARRERQQRWTRREECDFYRVVSTFGVEFSPAHGQFDWRRFRSFARLDKKTDDSLV
RYYHGFLAMCRRVCKLPQPPGQGKRDQSRTIALITEERASRTLYRIDLLRKIREQLLPHP
ALDQLLASLAQPSPELPDWWQSPQHDRELLLGAAKHGVSRTDQTILPDPEYSFHQARLAY
LQQHQLQSRSSTPQQQQLQQSSNPASPFQDTPSSGWGLECEKDSKGDGLAQEVLCSGSEG
SFPDSSRAVFSGMSGNSTPLLLPPRSLFQKERDGKRRDDSDSDTDSDKEDCSSSTSSNNS
GSSDESDTEKEGKMGREPKLFDPDEDGSVPSQDGFASEAGPEHTVLEMLQDKQRASEWPK
DRVLINRLDMLCSAVLTGRWLASRRVTPELGSPCLDEPRSSSPSPHSFTRLIPEDPEFTV
RLRHEEGLKLTIQKQSLHHNGTLAERSHQRGGRGRGAQAEGPSQDSPFSDPQARVPVIHS
LTRSVLVGQDAPRRSELSDWLKEHPEYEVEPQALSFLAGSHRHKKHRSKKISKLEPGTLS
GAERVQLVHLRSGRKLGGAFAPSLRGLRQCLEENPDYVVSADWAELVRHSGYLPDSMFDR
ILTQDIKKSSRRPKQTPRAHKHHGNSSRHDDRIIKLEPTSLNSTGGLPLLPDGSNAGSYQ
TEGNRHPHYHRDSSSAPSPVLPRHILSPPYGVKMEAELEGGALEVIDCSDSLSQGYASSD
KDLSLLDDPMMPNNSESSEGED
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccaatgatggacctttttgatgaccctaaccttttcaaccttgacccttta
cctgacgacactttcactcagagctcgtcggaccccatcgatgacgccctccggcttgcg
ttcggacaggtgaccaccccgccgcctcccccacagcacggggctcaggcctcgcagccc
cagcaagccgcccaaaccacacaaccgtatctctccttgcatgattacagcggacagaca
aaacaggcagtcctgcaggcgcctcctgcgaccactgcagtaacagctaccgcctctaaa
gaccccaccctgctgggggcgtccgttgcggtgcctgtctccacctccacgctgaccacg
gtggtaagaatgccgtcagcgggactgaaaaccatcgcagcttcttcaaatcaggcgcat
tcacagacggtcccgaaaatcgtcatcctcaaagcccccgcgacctcgggagcagtcacg
tctcaggggcaaattcacatggtcacgaccagcagcgccggcaacaatgggggcaaagta
atgctaggcaaagtgttgacaggaacccctctgcggccaggggtgtccatagtttccggg
gggaccgttttgaccaccgcggccacaggaaatgctaaggggagcctggtgaatgccgga
gcgggtggtgccggtgtgcaaagagtggtccagacctcgaatggaccagtgaagcaggtt
ctgctgcaggctgtgcagacccagcagacccagcagcagcagctccagccagggcaggtg
cagggcagcagcgccacgctcaaggcacctggaatcactctcacctccatcccacagggc
gagtcaaagcgcatcaccctggtcctgcagcagccccagcagggaggctcagtgagcggg
ctggccggagggcagcgcttcatcctggggggcctgcctgggaagatagtgttgcagggg
aaccagctggctgcactcacccaggccaggaacagcgcgcagggaggggccggcgcgggg
gggcagccaaaagtggtgaccatccagctgcaggtgcagcagcaacccaactgcaacacc
aagctgcagctggtatctccctctggtggccagcagcaggtactgcagttcagtcagggg
caggggcaggtgcaggggcagagactggccgtgcctctcaagctgctgcttcagccacag
gctggctcgtcccagggctctgtatcggtagtgaaagtgtcaaacatgtctgaagctcag
tccagcgccggggaccagtcccccactccctgcccggcccggggccctgagacccgccgg
ctagagcaccagcgcaaacaggagaaggccaaccgcatcgtggccgaggcgatcgccagg
gccaaggcgcgcggagagcagaacatcccgcgtgtgctgaaccaggacgagctgccctcc
ctggctgcagggggcgctgccgcagctgggccagggggcgaggacggggcgggcgaggag
ggggccaccggcaagaagaagagcagcaagaagaggagttccggggccgcgtccggaacg
gcaagggaggagggcaagcagacaaccaagaagagcaagactgcagggagcagcggagca
gcagggccggggagcaaggccaaggggaaagtgaaagctaacaccatcacgcctgtcgcg
ggcaagaagcgcaagaggattggctcctctgacaattccgacggagagctgactccgccc
acttcgccgcgaggagaggaagacgagagtgcgaagaggcgctctaaccggcaggtgaag
cgtaggaagtacacggaggacctggacatcaagatcacggacgacgaggaggaggaggaa
gatgtggacgtgacgggtcctgtcaagcaggagccaatcacagagccgcaggcagaggga
ggagatggggtgcccacaatgcagttcttcgtggaggacccaaacgaggaggatgctacc
attgtggataaaatcctgtccatgagactcaccaagaaagagatctgtcaaggccagtac
accaccgtggaagagttctttgtcaagtataaaaactactcgtacctgcactgtgagtgg
gcctctcttgaacagctggaacgagacaaacgcattaaccaaaaactgaagcgcttcaaa
accaaggtggcacagatgaggcacctgttccacgaggatgaggaccccttcaaccccgac
tatgtggaggtggacagaatcctggatgagtcccacagtgtggacaaagacaacggagag
cctgtgatctactacctggtgaagtggtgctccctgccctacgaggactccacatgggag
ctgcaggaggatgtggaccaaggcaaggtggaggagttcaggaagatccaggggagacaa
cctaacctcaagagagtgccacgccctgccgccagtgcctggaagaagttggagctttcc
cgggaatataagcatgggaattgtcttcgtgaataccagctggaaggagtcaactggctg
ctcttcaactggtacaacaaacagaactgtatcctggctgatgagatgggtctagggaag
acgatccagtcaatcagcctgctgcaggaggtgtacagcgcggggctgcatggccccttc
ctcatcatcgcccctctctccaccatcaccaactgggagagggagttccagacctggacc
gacatgaacaccatcgtctaccacggcagcctggcctccaggcagatgatacagcagtac
gagatgtactgcaaggacgacaagggtcacctgatcccgggagcctacaagttcgatgct
ctgatcacgactttcgagatggtgctgtctgactgccctgagctgagagagatcgagtgg
aggtgtgtgattatcgacgaggcacacagactcaagaacagaaactgcaagctgctggac
agcctcaaacacctggacctggagcacaaggtcctgctgaccggcacccccctgcagaac
acagtggaggagctcttcagcctgctcaacttcctggagccctcgcagttcccatccgag
acagagttcctcaaggacttcggggacctcaagactgaggagcaggtgcagaaactgcag
gcgctgctgaagcccatgatgctgcgcaggctgaaggaggatgtggagaagaagctggtt
cccaagcaggagaccatcattgaagtggagctcaccaacatccagaagaaatactaccgc
gccatcctggagaggaacttcagcttcctgagcaaggggcctgggcagagcaacaacgtg
cccaacctactcaacaccatgatggagctgcgcaagtgctgcaaccacccctacctcatc
accggtgcggaggagaagatcctgtctgacctgcgtgaggtctatgaccccctggctctt
gatttccacctgcaggcgatggtgcgctcggcaggaaagctggtccttatcgacaagctg
ctgcccaagctgaaggccggagggcacaaggtgctcatcttctctcagatggtgcgctgc
ctggacatcctggaggactacctgatccacaagaggtacctgtatgagcgcattgatggg
cgcgtgcgagggaacctgcgccaagctgccattgaccgcttcagcaagcccgactcggac
cgcttcgtgttcctgctgtgcacccgagcgggggggctgggcatcaacctgaccgctgcc
gacacctgcatcatcttcgactctgactggaacccccagaacgacctgcaggcccaggct
cgctgtcaccggatcggccagtccaaggcagtgaaggtgtaccggctcatcaccaggaac
tcctacgagagggacatgtttgacaaggccagcctcaagctgggcctggacaaggctgtg
ctgcagagcatgagtggcaaggagaataacgccaacgggatccagcagttctctaagaag
gagatcgaggatctgctcaggaaaggagcctacgcagcagtcatggacgaggaggacgag
ggcagcaagttctgtgaggaagacattgaccagatccttcagcgcagggccaccaccatc
accatagagtccgaggggaagggctccaccttcgccaaggccagttttgtggcatcggag
aaccggacagatatctcgctagacgacccaaacttctggcaaaaatgggctaagaaggcc
gatctagacatggacaccatcaacaggaagaacaccttggtgattgacacgccgcgtgtc
cggaagcagactcgtcagttcagcactctgaaggacgatgaccccgtggagttctcagac
ctggacagcgaggaggagcggccacgctcccgcaggcacgagcgccaccacgggtacggc
cggacggattgcttccgggtggagaagcacctgctggtgtacggctggggccgctggcag
gacatcctgtctcacggccggttcaagcggaggctgagcgagcgggatgtggagacaatc
tgcaggactgtgctggtgtactgcctgctgcactaccgaggagacgagaacatcaagggc
ttcatctgggacctgatcaccccctccgagagcgggcaggccaaggagctgcagaaccac
tcaggcctgtcgatcccggtcccccgtggcaggaaagggaagaaggtgaaagcccagagc
accttcgacgttcacaaagcggagtggatccgccagtacaacccggactctctgttcatg
gatgacagctacaagaagcacctgaagcaccagtgcaacaaagtgctgctccgggtgcga
atgctgtactacctgaaacaggaagtgatcggggaccaggcagagagggttctgggagga
gccgacgccaggcagatcggtatttggttcccagaggtggatcagttggagctgccggct
cgctggtgggacgcagaggcagacaagtccctcctcatcggggtattcaaacatggctac
gagaagtacaacaccatgcgcgctgacccctccctgtgcttcttggagagagtaggccgt
cccgacgaaaaagccatcgagacagagcagagggggggagacaatttcggggacctggga
gagggtggtgattttgacaagtacacagaggacccagagtacaaacccattcagggcatg
tcaaaggaacaggatgaagagggagactccatgatgctggatgaggagatctctgtggtg
gacggggatgaaggtcacatggcccagacgggtgcagtgtattggccagctggctccgcg
ctgacggctcggctccggcgcttgatcacagcgtaccagcgcagttaccggcgcgagcag
ctcaagatggaggccgcggagaaaggagaccgccggcgccgcaggtgcgaggcagcttac
aaactgaaagagatcgcacgcagggagagacagcagaggtggacccggcgggaggagtgt
gatttctaccgtgtggtctccaccttcggagtggagttctctccagcgcacgggcagttc
gactggcgccgcttccgctccttcgctaggctggacaagaagacggacgacagcctggtg
cgctactaccacggcttcctggccatgtgtcggcgcgtctgcaagctgcctcagcctccg
ggacagggtaagagagaccagagcaggaccattgccctgatcacagaggagcgagcctcg
cgcaccctttacagaatagacctgctgcgcaagatccgtgaacagctgcttccccaccct
gccctggaccagctcctagcctctctcgcacagcccagtcccgagctcccagactggtgg
cagagccctcagcacgacagggagctcctgctgggggcggccaaacacggagtgagcagg
accgaccaaaccatcctccctgacccagagtacagcttccaccaggcacggctggcatac
ctgcagcagcaccagctccagtccaggagctccacccctcagcagcagcagctgcagcag
agttccaaccccgcctccccattccaggacactcccagcagtgggtggggcttggaatgt
gagaaggattctaaaggggacggcctagctcaggaggtgttgtgtagtggaagtgagggc
agttttcctgacagcagtagggcggtgttttccgggatgtctgggaattccacccccctg
cttctgcccccgcgttccctgttccagaaggaaagggatgggaagaggagagacgattcc
gattcggatacagactctgataaggaagactgttcatcctcgacgtcttccaataattct
gggtcgtctgatgaaagtgatacagagaaggaagggaagatggggagggagcccaagctc
tttgaccctgacgaggatggcagtgtcccttcccaggacggctttgccagcgaggccggg
ccagagcacacggtgctggagatgctgcaggacaagcagagagccagcgagtggcccaag
gaccgtgtgctgataaaccgcttggacatgctgtgctcggccgtgctgactggacgctgg
ctggccagccgcagagtgacccccgagctggggagcccttgtctggacgagccccgctcc
tcctccccctcccctcacagcttcaccagactgatcccagaggaccccgagttcactgtg
agactgagacacgaggagggcttgaagttgaccattcagaagcagagtctgcaccacaat
ggcaccctggcagaacggtcccaccagagggggggacgagggaggggcgctcaggcagaa
ggtccgtcccaggactcccccttctcggacccgcaggcccgtgtcccagtgatccactcc
ctcactcgctcggtgctggttgggcaggacgcccccagacgcagcgagctctccgactgg
ctcaaagagcaccccgagtatgaggtggagccccaggccctgtcgttcctggcagggagt
cacagacacaagaagcaccgcagtaagaagatctctaaactggaacccgggaccctgagc
ggagcagagagggtgcagctggtccacctgcgcagcggcagaaagctggggggtgcgttc
gccccctctctccggggtctccggcagtgtctggaggagaatccggactatgtcgtctcc
gcagactgggctgagttagtcaggcactcgggttatctccctgactccatgtttgatcga
attctcacccaagacatcaaaaagtccagcagacgccccaaacagactcctcgtgctcac
aaacaccacggcaacagcagtcgccatgacgacagaatcatcaaactggaacccacttct
ctcaactccacaggagggctccccttgctgccagatggctcaaatgcaggcagctaccaa
acggagggaaacagacatccccactatcaccgtgacagcagctctgctccttcccctgtc
ttgccacgtcacatcctgtcgccgccttatggtgtcaagatggaggcggagctggagggt
ggagccctggaggtgattgactgcagcgatagcctatcgcagggctacgctagctccgat
aaagatttgtctctgctagatgatcctatgatgcctaataattcagaatcaagcgaaggt
gaagattga
DBGET
integrated database retrieval system
