Polyodon spathula (Mississippi paddlefish): 121307499
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Entry
121307499 CDS
T07273
Name
(RefSeq) protein transport protein Sec16A-like
KO
K20353
COPII coat assembly protein SEC16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121307499
Membrane trafficking [BR:
pspa04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121307499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
DIM1
Motif
Other DBs
NCBI-GeneID:
121307499
NCBI-ProteinID:
XP_041095614
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All DBs
Position
56:452498..472731
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AA seq
1813 aa
AA seq
DB search
MQPPPRAEPPGAAAPPPVGVPNAFRRSSPYSRRANVPVPAPAAPVPPMTDPFAFGRQTPQ
NTPLGNPPPKSSPVPVQGPPPSSFTQPGPVQNQLAPAQTFGSTQGLHSVPSSSTGVNLFT
PNSCVAPSPLPGHFNNSNRFVSPTPHVREQGQLNSREHSPFNVQGSQQNSFVGPPHAAAP
LQNRPPYGQDIRGEPISYNPTVPNAMSFPAQNMQPAATSWLPDYGNCPPSSQNYFQPGDH
PTQQFGVPLPTSSPANIPSQTPPQNQVHSEQQPQDGQQNMTPFLGFVNSHPPPDKTEGNN
PPVSQHHNPPFQSQNHFSQDYGSSNTWFNQPHQEHFYHQPGAAETSFPPTNTGQAGLPPE
GNHIPYESDTGSVSMFFKGNEVENEETLASEKKAMNSVPGGELFLQSQAQPLVGVDVAQN
AAVVHQSFDHNVTGPIDAMSSCETGPYLNDSAFVSEPQENAGVHFDNVENLECAPNLEVL
PGNPLNIPPMPQTVPEGARLGPLPGQGNPVPHVADNFEGGPNLETPDSVLDRPVRSESVS
SSYSNVSHGSASSSRRPQGVVGTFIQQEIAKPPQEVSAGYFEQVDSSPAGDAVVQNIANN
VYHRQLSQPPTPSPPKPTGIFQASANSSFEPVRSHSVGVKPAEVDQARMVMEKNSGAQSN
APHGAVVTDASPGNLEQPPDNLENIFMPTGQPPVGSPNNVLQPISKPTVETVQPLPDRRP
SSRAHAPRLKCESPATTLWAQNEVMPLNILLAPAAPPVHVFVKQPSMEVIQPPEDGPLDQ
PLEQQAAHKTFISQNADVSSENLENPPQVGEGDHLKQQVTKDAQQSAGTGQAPQKQTAPP
SQQTALNPQRSATQPGLHVSDGTPPSQSVQDPGPLSSQYPQSFPMVPGPQGMGAPNPPMG
YGTTGPGVAQHPMYPPQPPNLQQPSIANSSQQPPQDLQRPTPSHTPQLMYGPPPQHPAAG
YGYYGGGAYPEYPDGRHPYQQPYPPGDPRTVQPYYQEDLYRRYDPRYGRYEGYNPGYREG
NRYPYPEQPERPSSRASQYSDRPSSRQGYSEDNYLKGGRSAYDDYYADYYKKQYDYGDRS
QWDRYDPASYDARYREYYDQQYWYNYDPEAYRRREQYYSQQYPRREGYDDRWQYDPRYDT
SFDDESARPRDPYGDEYDRRSVHSEHSAHSVHSSHSQQSRRSSFSSRSQQSQVYRSQQDL
VTAGYEAPSQPAPPADYSYGQYIDSVAGRQEFTDYQYPTGYPEETGWQSVEQVPPRPVTP
EKFTVPHICARFGPGGQLIKVLPNLPSEGQPALVEIHSMETMLQSTQEQEDLRAFPGPLV
KEETHKVDVIKFSQNKAMECLRNDNLLDKDSASLIWEFIVLLCRQNGTVVGTDIADLLLR
DHKSAWLPGKSPNEANLIDFNNEALDRAEEDPGSGQLSLLSDTVMSVPENAGKETERFRE
LLLFGRKKDALESAMKHGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMS
GRMPAAATCCGDDKWGDWRPHLAMVLSNLTNTLDLDTRTISTMGDTLASKGQMDAAHFCY
MMAQVGFGVYTKKSTKLVLLGSNHSLPFFKFASNEAIQRTEAYEYAQSLGSQTCLLPNFQ
VFKFIYACRLAEAGLSAQAFHYCEVISRTVLKRPSYYSPVFINQLIQMSAKLRFFDPQLK
ERPEQELFIEPDWLVRLHQLDGQIKEGAISYSSDRATPQQYACSTSSSELDHTSQTDGIG
FPQDTTSNTSEIPLMTSLMPNPGPPVPGVQLMPPAPQTILDGTMPPVPSPQYAADVPFNP
VPPQMQPPVQGQD
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctcctcctcgagctgaaccccccggggctgccgcccccccacctgtaggggtc
cccaatgcatttcggagaagcagtccttacagcagaagggcgaatgtgccagtgccagcg
ccagctgcacctgtgccaccaatgacagatcccttcgcgttcggcaggcaaacccctcaa
aacacaccactgggaaatcctcccccgaagagcagccctgtccctgtgcaaggaccgcct
ccttcaagtttcacacagcctggcccagtccagaatcagttggcacccgcacagacgttt
ggtagtacccagggcctccactctgtaccgtcatcatcgactggagttaacctctttacc
ccaaacagctgtgtggctccatcacccctgccaggacattttaataactcaaacaggttt
gtctcgccaacccctcatgttagagaacagggacaacttaactccagagaacattccccc
tttaatgtgcaaggatcacaacagaatagctttgtcggtcctcctcatgctgcagcccct
ctccagaacagacctccttacggacaggatatcagaggagagcctatctcttacaatccc
acagtacctaatgcaatgtcattccctgctcagaacatgcagccagcagccacttcatgg
ttgcccgattatggcaattgtccaccttcatcccaaaactactttcagcctggtgaccat
ccaacccagcagtttggtgttcctttgccaacttcatctccagctaatataccatctcag
acgcctccccaaaaccaggtgcattcagaacagcaaccacaggatgggcaacaaaatatg
acacctttcctaggttttgttaacagtcatccgccaccagacaaaacagaaggaaataat
ccacctgtttcccaacaccataacccaccatttcaatctcaaaatcatttcagtcaagac
tatgggtcgtctaatacctggtttaaccagccacaccaagagcatttctatcaccagcct
ggtgcagcagaaaccagctttcctcctactaataccggacaagcagggcttccaccagaa
ggcaaccacattccttatgaatcggatactggaagtgtttcaatgtttttcaaaggtaat
gaagtggaaaatgaagaaactctggcaagtgagaagaaagccatgaacagtgttcctggt
ggagaattgtttctgcaaagccaggctcagcccctagtgggtgttgatgtggcacagaat
gcggcagtagtccatcaaagttttgatcataatgtgaccggccctattgatgcaatgtcc
agctgtgaaacaggcccctatctgaatgacagtgcttttgtaagtgaaccgcaagagaac
gctggggtgcactttgataatgtggaaaacctggaatgtgcacctaatctggaggtttta
cctggcaacccactcaatatcccaccaatgcctcaaactgttcctgaaggtgcaaggctt
ggaccactcccaggccagggaaatccagttccccacgtagctgacaattttgaagggggg
cccaacttggagactccagattctgtacttgatcgtcctgtgcgatctgaaagcgtctct
tccagctacagtaatgtaagtcatggcagcgcatctagttccagaagaccacaaggagtg
gtgggaacatttatacaacaggaaattgcaaaaccccctcaagaagtctctgccggttac
tttgagcaagttgatagttcccctgcaggagatgcagtcgtacaaaacattgctaacaat
gtgtatcacagacagctttcccagcctccaacacctagccctcccaaaccaacaggaata
tttcaagctagtgctaacagttcctttgaaccagtccgatcccactcagttggagtaaaa
cccgccgaggttgatcaagccaggatggtgatggagaaaaacagtggagcgcaaagcaat
gccccacatggggctgtggttacagacgcatcgcctgggaatcttgaacagccacctgac
aacctggaaaacatatttatgcccacgggacagccacctgttggtagcccaaataatgtg
ttacaacccatcagcaagcctacagtagaaacagttcagccactgcctgatagaagacca
tcttctagagcacatgctccacgcttgaaatgcgagagtcctgccactaccctgtgggca
cagaatgaggtcatgccgctgaacattctcttagccccagctgcccctcctgttcatgtc
tttgttaagcagccaagcatggaggttattcagcccccagaagatggccctttggatcaa
ccattggagcagcaggctgctcacaaaacatttatctcacaaaatgctgatgtgtcttca
gagaatcttgagaaccctcctcaagtgggtgagggtgaccatctgaagcagcaggttacc
aaagatgctcagcagtcagctgggaccggacaggcacctcaaaagcaaacggctccacct
tcacagcagactgctttaaacccccagcggtcagctactcaacctgggctccatgtaagt
gatggcacaccgccatcccaaagcgtgcaggatccaggacctctaagcagccagtaccca
cagtcttttcctatggtacctgggcctcaaggaatgggagctcctaatccaccaatggga
tatggcacgacagggccaggggtggcacagcaccccatgtaccctccacagccccccaat
ttacagcagccttcaatagccaattcttcacagcagccccctcaagatctgcagcggcca
accccttcacacacacctcagctgatgtacgggccaccacctcagcatccagcagcaggg
tatgggtattatggtggtggggcctatcctgagtatccagatggcaggcatccttatcag
cagccctatcctcctggggatccaaggactgttcagccatattatcaggaggatctgtac
agaaggtatgaccctcgttacggtcgctatgaagggtacaatccaggataccgggaaggg
aacaggtatccgtaccctgaacagccggagcgccccagttctagagccagccaatactct
gacaggccttcctccagacaaggctattctgaagacaactatctgaagggtggtcgaagt
gcctatgatgattattatgcagactactataaaaagcaatatgactatggagatcgcagc
caatgggaccgttatgatccagcttcctatgacgctcgttatagagaatactatgaccag
cagtactggtacaactatgacccagaggcttaccgacgaagagaacagtactacagccag
cagtatcccagacgggaaggatatgatgatcgctggcagtatgatcctcgctacgacacc
agctttgatgatgagagtgctcgcccgagagacccctatggggatgagtatgacagacgc
agtgtccacagtgaacactcagcccacagtgtgcacagctcacacagtcagcagagccgt
cgaagcagcttcagctcccggtcacagcagagtcaggtttacagaagccagcaggacctt
gtcactgctggatatgaagccccgagccagcctgcccctccagcagattactcctatgga
cagtacattgacagtgtagcaggccgtcaagaattcaccgactatcagtacccaacaggc
tacccagaagaaacaggatggcaatctgttgaacaagtgcctccaagacctgtaactcct
gagaagtttacagttcctcacatatgtgccaggtttggtccaggaggtcagttaatcaaa
gttctgcccaacctgccttcagaaggccagcctgctttggtggaaatacatagcatggag
accatgttacagagcacacaagagcaagaagatctaagagcattcccaggacctcttgtc
aaggaggaaacccataaagttgatgtaatcaaattttctcagaacaaagctatggagtgc
ctgagaaacgacaatctgcttgataaagattctgcaagtctaatctgggagttcattgta
ctgctgtgcaggcaaaatgggactgtcgttggaactgatattgctgatctcctgctgcgg
gatcataagtcagcctggctgcctggaaagtcaccgaacgaagcgaacctgattgatttt
aacaatgaggccctggaccgagctgaggaggaccctggctctgggcagctctccctgctc
tcggacactgtcatgagtgttcctgaaaacgcaggcaaggagacggagcgcttccgggag
ctgctcctcttcggccgcaagaaggatgctcttgaatctgcaatgaagcatggattatgg
gggcatgctctgttacttgccagtaaaatggatagcaggacccatgcaagagttatgacc
aggtttgctaacagcctccctattaacgatcctctacagacggtatatcagctgatgtct
ggaagaatgcctgccgcagccacttgttgtggagatgataagtggggagactggaggcct
catctggctatggtgctgtcgaatctcactaataccttggaccttgatactcgaaccatc
tctactatgggagacacgcttgcctcaaagggacagatggatgcagctcatttctgttat
atgatggcccaggttggatttggtgtttataccaagaagtcaactaaacttgtcctgttg
gggtccaatcacagcttgccgttctttaagtttgcctcgaatgaagccatccagcgaaca
gaagcatatgagtatgcacagtctttgggctcccaaacctgtttactgcctaacttccag
gtatttaaatttatatatgcctgccgactagctgaggcgggcctttctgctcaggcattt
cattactgtgaagtcatttcaagaactgtcctcaagcggccgtcctactattcacctgta
ttcatcaaccaactcattcagatgtctgcaaaattgagattctttgaccctcagttgaag
gaaagacctgagcaggagttgtttattgaaccagattggttagttcgacttcatcagctg
gatggccagataaaggaaggtgcaatctcctatagttcagaccgagccacaccccagcag
tatgcttgcagcacctccagctctgagcttgatcataccagccagacagatggcattgga
tttccccaggacacgacctctaatacatcagagatccctctaatgacatcgttgatgcca
aatccaggtccaccagtgccaggagtgcagctcatgccaccagctcctcagactatcctt
gatggaacaatgcctccagtcccctccccacagtatgctgcagatgtcccgtttaaccca
gtgccacctcaaatgcaacctccagtgcaggggcaagactga
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integrated database retrieval system
