Polyodon spathula (Mississippi paddlefish): 121307557
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Entry
121307557 CDS
T07273
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1-like isoform X1
KO
K17908
autophagy-related protein 18
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04136
Autophagy - other
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121307557
04136 Autophagy - other
121307557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121307557
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121307557
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
121307557
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121307557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML
Beta-prop_RSE1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
EIF3I
MrpH_N
BCAS3_WD40
Motif
Other DBs
NCBI-GeneID:
121307557
NCBI-ProteinID:
XP_041095679
LinkDB
All DBs
Position
57:complement(802864..815254)
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AA seq
373 aa
AA seq
DB search
MPRRMNVYHFKKGTEICNYSYSNNILAVRLNRQRLIVCLEESIYIHNIKDMKLLKTLLNT
PVNPTGLCALSINHSHSYLAYPGSSVIGEIIVYDANNLSTVTMIPAHDSPLAAITFSSSG
TKLSSASERGTVIRVFSVPEGLKLFEFRRGMKRYVSISSLSFSTDAQFLCASSNTETVHI
FKLEQHSHSSWDEESPTWSAYVGKVFSAASNYLPAQVSDMMNQDRAFATVRLNVFGQKNV
CALSTIQKLPRLLVASADGHLYIYNVDPQDGGECVLVKKHRLFGSDEEEEEASESEVTTA
PVSQSYAATVAMPTTVPSSSAVTAYSEDGGAKKGEMIPEHEFAASPVCLDDENEFPPINS
CRGGSRSGQGRRT
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgccgtatgaacgtctaccacttcaagaaagggacggagatctgcaactacagc
tactccaacaacatcctggctgtgcgtttgaaccgccagagactgattgtctgtctggag
gaatccatctacatacacaatataaaggacatgaagttattgaaaactctactcaatacg
ccagtaaaccctacaggcttgtgtgcactttccattaaccattcccactcgtacctggct
taccctggcagctcagttatcggggagattatagtgtacgatgctaataacttgagcaca
gtgaccatgattccggcccatgacagcccactcgctgctataaccttcagctcttcagga
actaaactgtccagcgcttccgagaggggcacagtcatccgagtcttctccgttccagag
ggtctaaaactcttcgagttccgcagagggatgaagaggtacgttagcatcagctctctc
tcgttcagcacggatgctcagttcctctgtgcctccagcaacacggagactgtgcacatc
ttcaaactggagcagcacagccacagcagctgggatgaggagtctcccacctggtctgcc
tatgtagggaaggtgttttccgctgccagtaactacctcccggcgcaggtgtcagacatg
atgaaccaggaccgcgccttcgccacagtgaggctcaacgtcttcggacagaagaacgtc
tgcgctctctccacgattcagaagctgccccgcctgctggtcgcctctgcggacggacac
ctctacatctacaacgtggacccgcaggatgggggcgagtgtgtgctggtgaagaagcac
aggttgtttggctcggacgaggaggaagaggaggcttcagagagcgaagtgaccactgcc
ccggtcagccagtcgtacgctgctacggtggcaatgcccactaccgtgccttcctcttca
gcggtgacagcttattcggaggacggaggagcgaagaaaggcgagatgattccggaacat
gaattcgcagccagccctgtgtgtctggatgacgagaatgagttccctccaataaattcg
tgccgtggcgggagtcggagtggacaggggaggaggacgtga
DBGET
integrated database retrieval system
