Polyodon spathula (Mississippi paddlefish): 121307696
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Entry
121307696 CDS
T07273
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
121307696 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121307696 (depdc5)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
121307696 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IML1
IML1_N
DEPDC5_CTD
DEP
FGGY_N
Motif
Other DBs
NCBI-GeneID:
121307696
NCBI-ProteinID:
XP_041095875
LinkDB
All DBs
Position
58:complement(1238094..1261504)
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AA seq
1444 aa
AA seq
DB search
MRTNRVYKLVIHKKGFGGSDDELMVNPKVFPQVKLGDIVEIAHPNDEYSPLLLQVKSLKE
DLQKETISVDQTVAQAFRLRPYQDVYVNGVHPKDVTLDLVELTFKDQYIGRGDMWRLKQS
LVSTCAYITQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCE
MWDFDIYGDLYFEKAVNGFLSDLFAKWKDKNCSHEVTVVLFSRTFYDAKTTEEFPEAHRS
SIRQDHEGRFYEDFYRVVAQNERREEWTTLLVTIKKLFIQYPVLVRLKEAGGFPSGHNST
AAEGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDN
GIGVDLVCMGEQPLHAVPLFKLHNRAVPGDSRLGDDYNLPHWINHSFYTSKSQQSCNYFT
PRIKLAGRKVAVPVEKGKNGKDQALAAPKESENSLPIQVDYDAYDAQVFRLPGPSRAQRS
TNFRTVRERDASTRKSSSSCDVSSSPPQPGKPLPLEEVRSQASDDSLGKISNILLIPRLH
QHQYEVSSSLGYTSTRDILERMMDAQTRDSSAPGRFHVGSAESMLHVRPGGYTPQRALIN
PFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSDLRDPTQSSAELL
ELAYHEATGRRTAARQQVESGPYPGCGGMDEFTSSPASSHSTGTPVNRGSSFEDSTSSSP
DPILMLSAPPVVPSFCCTVGVDWKSLTTPACLPLTTDYFPDRQSLQNDYTQGCYDLLPES
DLDRRDEEEALMTAQQVFEEFICQRLMQGYQIIVQPKNKKTAPATGPPLSSSPLYSRGLV
SRNKPEEEEDQYWLSMGRTFHKVCLKDKIITVTRYLPKYPCESAQIQYSYSLCPSHSNAE
FLPCWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPACITATKRIM
EGEARCDIYGERPRSDDEEWQLLDGFIRFVEGLNRIRRRHRSDRMIRKGAAIKSLQVTGP
IAAYPSEPPGPPLGKKGTSALSALLEMEANQKSLEEYQAAMLSAKSSAQLSDTAGVAMTP
TYMDSPRKDGAFFLEFVRSPRNTSIYHPQILMDQLAVAGNATESGAAVQLGERSSSAGSA
QNCQNTGEQGAAWTSAGEGSAQPSSGVSRSLTSSSTLAEILEAMKHPATGVQLLPEQKGL
PAHCFISAEVVHWLVNNVEGVHTQAMAIDIMQKMLDDQMIVHASGEAMRTFVYGFYFYRI
VMDRDPDRVQGIQPSTIWYTAAMEDFALFQRKWFEVAFVLEERLHSEIPVFFLPWLPSRP
ASYASRHSSFSRSFGGRSQAAALLGRCTDRAARGCEGATLQGDGLTWTALSKTNKQTNFR
SFIWQFDSLNAASASLVILIKMLKKNKKNNTIAVLIRQAAQMVCVGTVQVSQVRSAWVEW
GQLV
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccaacagagtttacaagcttgtgattcacaaaaaggggttcggaggcagcgat
gacgagttgatggtgaaccccaaggtgtttcctcaggtcaagcttggggatatagttgag
atcgcacaccccaacgatgagtacagtccgctgctgctgcaagtaaaatctctcaaggaa
gatctccaaaaagagaccatcagcgttgaccagacagtggcccaggctttcagactgaga
ccgtatcaggatgtctacgttaatggagttcatccaaaggatgtgacccttgacctcgtg
gagctgacctttaaagaccagtacatcggcagaggagacatgtggcgactaaagcagagc
ctggtcagtacatgtgcctacatcacacagaaagtggagtttgctggaatcagagctcaa
gctagcgagttgtgggtgaaaggtgaaaaggtgacatgtggctacataagtgaagatacc
agggttgtgttccgctccacctctgccatggtctatatcttcatccagatgagctgtgaa
atgtgggacttcgacatctatggtgacctgtattttgaaaaggctgtcaatggcttcctg
tcagacctgtttgctaagtggaaggataagaactgcagccacgaagtgacggtggtcctt
ttctccagaaccttctatgatgcaaagaccacagaggagttccccgaggcccatcgctcc
tccattcggcaggatcatgaaggcaggttctatgaggatttttacagggttgtggctcag
aacgagagacgggaggagtggactacgttgctagtgaccattaaaaaactgtttatccag
tacccagtactggtgcgactcaaggaagcaggtggctttcccagcggacacaactccact
gcagcagaaggaaactacttggaggccatcaacctctcctttaacgtgtttgataagcac
tacatcaaccgaaacttcgaccgcactggccagatgtcagtggtgatcacgcctggggtg
ggcgtgttcgaggtggaccggctcctcatgatcctcaccaagcagcgcatgatcgacaac
gggatcggcgtcgacctggtctgcatgggggagcaacctctgcatgcagtcccactcttc
aagctgcacaaccgcgctgttcccggagactcgcgcctgggagacgactacaatctgcct
cactggataaaccacagtttctacacgtcgaagagccagcagtcttgtaactacttcacc
ccgagaatcaagctggctggaaggaaggtagcggtcccagttgaaaaaggcaaaaacggc
aaagaccaggctcttgctgctcccaaggagtcggagaacagcctccccatccaggtggat
tacgatgcttatgatgcccaggtgttcaggctgccaggcccgtctcgagcacagcggagc
accaacttcaggacggtgcgtgagcgggacgccagcacccggaagagctcgagctcgtgt
gacgtgtccagcagcccgccccagcccggcaagcccctacccctggaggaggtgcgcagc
caggcctccgacgacagcctgggcaagatctccaacatcctgctcatcccccggctccac
cagcaccagtatgaggtcagcagctcgctgggctacaccagcacccgagatatcctggag
aggatgatggacgctcagactcgagactccagcgctccgggccgcttccacgtgggcagt
gccgagtccatgctgcacgtgcggccggggggctacaccccacagcgcgccctcatcaac
cccttcgccccctcgcgcatgcccatgaagctcacctccaatcgcaggaggtggatgcac
accttcccagtgggcccctccggagaggcaattcagatccatcaccagacccggcagaac
atggcggagctgcaggggagcgacctgcgagaccccacccagtcctctgcagagctgctg
gaactggcctatcacgaagctactggcagacggactgccgctcgccagcaggtggagagc
ggcccatacccggggtgtggagggatggacgagttcaccagcagcccggccagcagccac
agcaccgggacgcctgtaaaccggggatcctctttcgaagactcgacgtctagcagccct
gacccaattctgatgctgtctgctccccctgtagtgcccagtttctgttgcacagtgggg
gtagactggaagtctctgaccacaccggcctgtctacccctcaccaccgattacttcccg
gacagacagagcctccagaacgactacacccagggctgctacgatttgctcccggagtcc
gacctcgacaggagagacgaggaggaggctctgatgaccgcccagcaggtgtttgaggag
tttatctgccagcggctcatgcaggggtaccagatcattgtgcagcccaagaacaagaag
acagcccccgccacgggacccccgctcagcagcagcccgctgtactcccgagggctggtg
tcccgtaataagcctgaggaagaggaggaccagtactggctgagcatgggtcggacattc
cacaaggtgtgcctgaaggacaaaatcatcactgtcaccagataccttcccaagtacccc
tgcgagtcagctcagattcagtacagctacagcctgtgcccctcgcactccaacgcagag
ttcctcccctgctgggtggagttctctcacgagaggctggaggagtacaagtggaactac
ctggaccagtacatctgctcggctggctctgaggacttcagcctcatcgactccctgaag
ttctggcgcacgaggttcctgctgctacccgcctgcatcacggccacaaagcgcatcatg
gagggcgaggcccgctgcgacatctacggggagcgaccgcgcagcgacgacgaggagtgg
cagctgctggacgggttcatccgattcgtcgaggggctgaacagaatccgccgccgccac
agatcagacaggatgatccgcaagggggctgctatcaagagtctgcaggtgacgggcccc
atcgctgcgtacccctcggagccccccggacccccgctagggaagaagggcacatcggcg
ctgtctgcgctgctggagatggaggccaatcagaagagcctggaggagtatcaggcagcc
atgctgtcagcgaagagctctgcacagctaagtgacacggccggtgttgccatgacaccc
acctacatggacagccccaggaaggacggagcgttctttctggagtttgtccgcagccct
cgcaatacctccatctaccacccccagatcttgatggatcagttggcggtcgcaggcaat
gcaacagagagcggtgctgcggtccaactgggggagagatccagctcggctggcagtgcg
cagaactgccagaacacaggggagcagggagcagcctggaccagcgccggagagggcagc
gctcagccctcttcgggagtctccagatcactgacgtcctcttccacgctagctgagatt
ttggaggccatgaagcacccagccactggagtccagcttctccctgagcagaagggcctc
cctgcccattgcttcatcagtgcggaggtggtgcactggctggtcaacaacgttgaagga
gtgcacacacaggccatggccatcgatataatgcagaaaatgctggatgaccagatgatc
gtgcacgcctccggagaagccatgcgaacgtttgtgtacggattctacttctacaggatc
gtcatggacagagacccagacagagtccaggggatccagccgtccacgatctggtacacg
gctgccatggaggacttcgccctgttccagaggaagtggtttgaggtggcttttgttctg
gaggagaggctgcactctgaaatccctgtgttcttcctgccgtggctgcccagccggccc
gcgtcctatgcaagtaggcacagttccttcagccgcagtttcggaggacggagccaggca
gctgctttattaggtagatgcacggaccgggcggcaaggggctgcgagggggctactctg
caaggggacggtctcacatggacagcgctgtccaaaacaaacaaacaaaccaacttccga
tcgttcatttggcagtttgactctttgaatgccgcgtctgcttcactggtgatccttata
aaaatgttaaaaaaaaacaaaaaaaacaacacaattgcagttttgattcgacaagctgca
cagatggtgtgtgtaggtacagttcaggtcagtcaggtcaggagtgcatgggttgagtgg
gggcagttagtatag
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integrated database retrieval system
