Polyodon spathula (Mississippi paddlefish): 121307796
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Entry
121307796 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6-like
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121307796
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121307796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
DEAD
HTH_CHD1_Hrp3
Chromo_MIT1
MUN
Motif
Other DBs
NCBI-GeneID:
121307796
NCBI-ProteinID:
XP_041096010
LinkDB
All DBs
Position
59:complement(992509..1015625)
Genome browser
AA seq
2709 aa
AA seq
DB search
MAANLRCFSPSLHSFHMASSKVLKHTPAAAAVSTAGDPNAQSSFPCSQTSLQEQPRASGL
SNHCMVHAKPGLGQDPAPPMNGIEDNWGGSRVKKKRKKKEEEEPGGGAAAKGTNQQEPKP
KKKRELKEGKEPKKDKQPKEVKKGKELKQQKEPKKTRKPQETKGPKEKRTAAATSPKSRG
RKPSKDQVQTPVEKKKKGKRKSETTVDSMDSDENISLTPHIPSAEETTDSTDGQKRRSGR
QVKRRKYNEDLDFKVVDDDGETIAVLGTGRVPALPSSTLAWQSEEPPEDEANIIERILSS
RWVNNETSPGEPTVQTEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMK
HIFTEPDEDLFNPDYIEVDRVLEVAHTKDTETGEEVTHYLVKWCSLSYEESTWELQEDVD
PGKIKEFEDIQKIPAIKHMERPAADTWQKLECSRDYRNANELREYQLEGMNWLLFNWYNR
KNCILADEMGLGKTIQSITFLYEIFLLGIRGPFLIIAPLSTITNWEREFRTWTEMNAIVY
HGSQISRQMIQQYEMLYKDEQGNPVPGLFKFHGVITTFEMILADCPELKKIHWRCVVIDE
AHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPMQFPSESTFLEEF
GDLKTEEQVKKLQALLKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF
TFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILEDFRKNHSPEAWDFQLQAMI
QAAGKLVLINKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQ
AAIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQS
KAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINKKGSTNGVQQLSKMEVEDLLRKG
AYGALMDEEDEGSKFCEEDIDQILQRRTRTITIQTEGKGSTFAKASFVSSGNRTDISLDD
PNFWQKWAKIAELELDSKDEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELESDSEDRP
SRTRRLNERNRRYMRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLVEKDMELICRALLV
YCVKHYKGDEKIKSFIWDLITPTKDGHSQDLQNHSGLSAPVPRGRKGKKLKNPMSLPETK
SADWLLSCNPEILLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAVKALEGIPSRD
LDVLLPDIDYLEIPVEWWDGDADKSLLIGVHKHGYERYHAMRTDPKLCFLERVGMPDEVE
QGVADVLSERSDTSKEDDLVNKEAVECDKDLAEEEAVACNKDKVENITAALDCSNQDRPV
WPVASSLTARLRRLITAYQRFNRKELIRSEFLVPDGHGTWHLSEEMRRRVVEPDPLFLEL
QNRWTRREQADFYRTVSSFGVVFDPEKKCFNWTQFRMFARLERKTDQSLERYFHSFVAMC
RCSCRLPPRKDEGPLDQPMFVEPITEERAARTLYRIELLRKVREQVLRHPELASRLQLCQ
PSLYLPVWWECGKHDRDLLIGAAKHGLSRTDYYILNDPQLYFLEAHRNYVQKEKKRHPGH
APARCCLYDASVSQCASSVPYPGTQHAIESAGSIMDPCVGEVGPGSKDVFMEDSMNHLAS
FHHDETLGAGNALHGKALKDSSNAFPFNTDTGGQSMLNTYSVQADVQAVAGKLHADPLGN
EQSHCEADLMAPSGGLDEMQTQWDSTEHTNAVDIFNESGAILGAQTLESEFLDSAQPAEE
RAESSLPDCMTMPSLNSQGNSMELLPASFMLFKEITGPVNVQDEPEVPAICDDHCATDYV
PSVTVTDLKMNHDCEDSVQENIGEPEEKLSDSDVTQSAPSLCDGSESVNLEFDKDDLSHD
DQSNVEEPEEGQREAGQGCVCDVGDENTLSSQTYEGADQVSPAFSVLEAQPASSGTESVG
ELRAEEYSEDRHFTDDKPMKSEAGAGLIAPRQEEMEMFALNDEKPQPTAVPVESCEEDAK
YSAHAARFEIQEGLLQDIREPTIAQLLQEKALYSFSEWPKDRVIINRIDNICHAILKGKW
PSSSQQFDSPSSVSAQSCANSIAHRNNFLSARVPATQSLSFSIGAGVPHLAKDGLVGMPF
MRDPRRSRRGFEFESEAASKQGRMEKIPVVLNGWQEAAMDLSKAGDLSAGGSPKLASAGP
LQSSLGLDMAGILQAGLIHPVTGQIVNGNLRRDDAVMRRRRGRRKNVEGVDLRFAKNRSL
QNQEQNGQEGPGLPCSGPVLSDRRNPATETQQAQSVLMEREVVNKSLLEWLRQNPNYTME
MPAFSHNVGILHGFAERPKQRRHRCKDPSKLDVNSLTGEERVPVVHKGTGRRLGGAMAPA
IKELSRWLDANAEYAVTPDWAEIVKHSGFLPEDKFSRILTEPVFRDPGPRRRGRRPRSEV
VKAAGAIPDSPSAMGPLFMNGLISGMDLVSLQNLRNMQGIPLTGLMGFPHGFATALPAGE
EGKGGLNMLPMMLHGMAAVQPHMFSVSGLLKPAATAATSSTTVTSSSTSPSSCKVEKDPV
DAPKREESEEKQCANSTSSHPEPTVTASGPLAFNPFLIPGVSHGLLYPHMFLPHGVSMAL
PGVQQTSSSEESPKSKKRNVKEDEAADEATSQTETPPETQNQTSTEQEPPPLPAGNCAEQ
TAEEGEGLL
NT seq
8130 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaacctgcgctgcttctctccctctcttcattcattccacatggcctcctcc
aaggtattaaagcacactccagcagcagcagctgtctccactgccggggacccaaacgca
caatcctccttcccctgcagccagaccagcctgcaagagcagcccagggcctcgggactg
tccaatcactgcatggtgcatgccaagccgggcctgggtcaggaccccgctccccccatg
aacggcatcgaggacaactggggaggcagcagggtgaagaagaaacgaaagaaaaaagag
gaggaggagccgggtgggggggcagcagcgaaagggacgaaccagcaagaacccaaacca
aagaaaaagagggagctcaaagaagggaaggaaccgaaaaaagacaagcagcccaaggag
gtgaaaaagggcaaggagctgaagcagcagaaagaacccaagaagacgaggaaaccgcag
gagacgaagggccccaaggagaagagaacggccgctgcgacgagccccaagagcaggggc
cggaaacccagcaaagatcaggtccaaactcccgtggagaagaagaagaaggggaagagg
aaaagcgagaccactgtggactccatggattctgatgagaacatttctctgactccccac
atccccagtgcagaggagaccactgattccacagacgggcagaagcggcgctcgggccgg
caggtgaaacggaggaaatataacgaagatctggatttcaaagtggttgacgacgatggc
gaaacgatcgctgtgctgggaacagggagagtgccggcgctgccttcatccacactggcg
tggcaatccgaggagcccccggaagatgaagccaacatcattgagaggatcctgtcatct
cgctgggtgaataacgagacttctcctggtgagccgaccgtgcagactgaagagttctac
gtcaagtacaggaatttctcctacctgcactgtaagtgggccacacttgaagagctggag
aaggaccccaggatcagtcagaaaattaagcgcttcaggaacaaacaggcacaaatgaaa
cacattttcacggagccggacgaggacctgttcaatccagactacattgaagtggacaga
gtgttggaagtcgcccacacaaaggatacagagactggggaggaagttacacattatttg
gtgaagtggtgctccctgtcctatgaagagagtacctgggagttacaggaggacgtggat
ccaggaaaaatcaaagagttcgaggacatccagaagatccctgccataaagcacatggag
cgcccggccgcagacacgtggcagaagctggagtgctcgcgggattacaggaacgccaac
gagctgcgcgagtaccagctggaggggatgaactggctgctgttcaattggtacaacaga
aagaactgtatcctggcggatgagatgggcttggggaagaccatccagtcaatcacgttc
ctctatgaaatattcctgctggggattcgagggcctttcctcattatcgcgcccctgtcc
accatcaccaactgggagcgcgagttccgcacctggactgagatgaatgccatcgtgtac
catgggagccagatcagcaggcagatgatccagcagtatgagatgctgtataaggatgag
cagggtaaccccgtcccgggtttgttcaagttccacggggtcatcaccaccttcgagatg
atcctggctgactgcccggagctcaagaagatccactggcgctgcgtggtgatcgacgag
gctcaccgcctcaagaacaggaactgcaagctgctggaagggctcaaactaatgaacctg
gaacataaagtgctgctgactggcaccccgctacagaactctgtggaggagcttttcagt
ctcttaaacttcctggagcccatgcagtttccctcggaaagcaccttcctggaggaattt
ggagatctcaaaacggaggaacaggtgaagaagcttcaggcgcttctgaagcccatgatg
ctgcgcaggctgaaggacgatgtggagaagaacctggccccgaaggaggagaccatcatc
gaggtggagctcaccaacatccagaagaaatactaccgagccatcctggagaagaacttc
actttcctggccaagggggccaaccagcacaacatgcccaacctcatcaacaccatgatg
gagctgcgcaagtgctgtaaccacccctacctgataaccggcgcggaggagaagatcctg
gaggatttccggaagaaccacagccccgaagcctgggacttccagctgcaggccatgatc
caggcagcggggaagttggtgctcatcaacaagttgctgcccaagttgatcgccggcgga
cacaaggtgctcatcttctctcagatggtgcgctgcctggacatcctggaggactacctc
atccagagacggtacacctatgagcgcatcgacgggagagttcgagggaacctgcgccag
gccgctatcgatcggttctgcaaagtggattcggaccgatttgtatttctgctgtgcaca
agagcagggggcctcggcatcaacctgacagctgctgacacctgcatcatcttcgactct
gactggaacccacagaacgacctgcaggctcaggcccgctgccacagaataggccagagc
aaagcggtcaaggtgtatcgcctgatcaccaggaactcctacgaaagggagatgttcgac
aaagccagcctgaagctggggctggacaaagcagtgctgcaggacatcaacaaaaaggga
agtaccaacggggtgcagcaactgtccaagatggaggtggaggacctcctgcgcaagggg
gcgtacggagccctgatggacgaggaggacgagggctccaagttctgtgaggaagacatt
gaccagatcctgcagcgccgaacgcggaccatcaccatccagaccgagggcaagggatcc
accttcgccaaggcaagctttgtatcttcaggaaacagaactgacatttctttagacgac
cccaacttttggcagaagtgggcgaaaatagcagagctggaactcgattccaaagatgaa
aaggaaagcttggtgatcgacaccccgcgcgtgcggaagcagacccgtcattacaactcc
ttcgaggacgacgaactgatggagttctccgagctggagagcgactctgaggaccggccg
tcccgaacccgccgcctgaatgagaggaaccgccgctacatgcgggccgagtgcttccgg
gtcgagaagaacctgctcatattcggctggggccgctggaaggacatcctgacccacggc
aggttcaaatggcacttggtagagaaggacatggagctgatctgccgagcgctgctggtc
tactgcgtcaaacactacaaaggagatgagaagatcaagagcttcatctgggacctcatc
acccccaccaaggacgggcacagtcaggacctgcagaaccactccggcttgtctgcgccg
gttcccagggggaggaaggggaagaagctgaagaatcccatgtccctgccggagacaaag
agcgcagactggctgctcagctgcaacccagagatcctccttcatgacgacagttacaag
aagcacctcaaacagcactgtaacaaggttctgctccgagtgaggatgctgtactacctg
aaggcggaggtgttaggagaagcggctgtcaaagctttagagggcattcccagccgcgac
ctggacgtgctgctccccgatattgactacctggagattccagtggagtggtgggatggg
gacgctgataaatctctgctcataggcgtccacaagcatgggtatgaacggtaccatgcc
atgcggacagaccccaagttgtgctttctggagagggtggggatgcctgatgaagtggag
cagggggttgcagatgtgctcagtgagaggagcgacacaagtaaagaagatgacttggtc
aacaaggaggctgtggagtgcgataaagacttggctgaggaggaagctgtcgcctgtaac
aaagacaaagtagaaaatatcactgcggccctagactgctccaatcaagacagacctgtg
tggccggttgcttcctccttgaccgcgagactgcgccggctgatcactgcgtaccagcgc
ttcaaccggaaggagctgattcggagcgagttcctggtgccagacggtcatggcacctgg
catctgtccgaggaaatgaggaggagagtcgtggagccggaccccctgttcctggagctg
cagaacaggtggaccagaagggaacaggcagatttctaccggacggtctcttcctttgga
gtggttttcgatcctgaaaagaagtgcttcaactggacgcagttcaggatgttcgctcgg
ttagagagaaagacagaccagagcctggagaggtatttccacagcttcgtggccatgtgt
cgctgctcctgccgactgcctcccaggaaagacgaagggccactggaccagcccatgttc
gtggagccgatcacggaggagcgagcggcgcggacgctgtaccggatagagcttctgcgg
aaggtgcgcgagcaagtcctccggcacccagagctggcctcgcggctccagctgtgccaa
cccagcctctacctccccgtgtggtgggagtgcggcaaacacgaccgggacctcctgatt
ggggccgccaagcacgggctgagccgcacggactactacatcctcaatgacccccagctc
tacttccttgaggcgcacaggaactacgtgcagaaggagaagaagcgccaccccggccac
gccccggcacgctgctgcctctacgatgccagcgtcagccagtgcgcctcctcggtccct
tacccagggacccagcatgccatagagtctgcagggagcatcatggacccctgtgttggg
gaggtggggccgggcagtaaggatgtgttcatggaggactcaatgaatcatctggcttct
tttcaccatgatgagactttgggggcaggtaatgcgctacacggaaaagctttgaaagac
tcgtccaacgctttcccgtttaacacggacactggagggcagagcatgctgaatacgtac
agtgtgcaagccgacgtgcaggcagtcgcaggcaagctgcacgcagatcctttagggaac
gagcagagccactgcgaggccgatctgatggcgccgtcgggcggcctggatgagatgcag
acccagtgggacagcacggagcataccaacgcagtggatatatttaacgaatctggagcg
atcctcggggcgcagaccctggagtcggagttcctggattcagcccagccagccgaggag
agagcagaaagctccctaccagactgcatgaccatgccgagcttgaactcccaaggcaat
agcatggagcttttaccagccagcttcatgctgtttaaggaaataactggtccagttaat
gttcaagacgaacctgaagttccagccatttgcgatgatcactgtgcaactgactacgta
ccctctgtcactgtgacggacctcaaaatgaaccacgactgcgaggacagtgtgcaggag
aacatcggagaacccgaggaaaagctgagcgattctgacgtcacccagagcgcgccaagc
ctgtgcgacggcagcgagagcgtaaacctggagttcgataaggatgatctctcgcatgat
gaccagagtaatgtagaagagcccgaggagggacagagggaggctggacaaggctgtgtc
tgcgacgttggagatgaaaataccctcagcagtcaaacctatgaaggggcagaccaggtg
tctcccgcgttctctgttttggaggctcaacctgcatcgtcgggaacggagtcagtcggg
gagttgagagcggaggagtacagcgaagaccggcacttcacagatgataagcccatgaaa
tcagaggctggagctggtctgatagcacccagacaagaagagatggaaatgtttgccctg
aatgatgaaaaaccccaacccacagctgttcctgtggagagttgtgaagaagatgccaag
tactctgcccatgctgctcgctttgagatccaggaggggcttctccaggacatccgggag
cccaccatcgctcagctgctgcaggagaaagcgctttactccttctctgagtggccaaag
gatcgggtgatcatcaaccggattgataacatctgccatgccatcctgaaggggaaatgg
ccatcttctagtcagcagtttgactctccgagctctgtgtctgcccagagctgtgcgaac
agcatcgctcacagaaacaatttcctctccgcacgggtcccagcgacccagagcctgagc
ttcagcatcggggctggcgtcccccacctcgccaaggacgggttggtgggcatgccattc
atgcgggaccccaggagaagccggcgggggtttgaatttgaatcggaggcagcctccaag
cagggcaggatggagaagataccggtggttctgaacggctggcaggaggccgccatggac
ctctcgaaggcgggggacctgtccgcgggaggctcgcccaagctggcctccgctggcccc
ctgcagagctcactggggctggacatggccgggatactgcaggccggccttattcacccc
gtcaccgggcagatcgtcaacggtaacctgcgcagggacgacgcagtcatgaggaggagg
cggggccgcaggaagaacgtggaaggggtggacctgcgattcgccaaaaacagaagcctt
cagaatcaggagcagaatggtcaggagggtccaggccttccttgctctgggcccgtgctg
tctgacaggcgaaacccagccacagaaactcaacaagcacagagtgtgttgatggaaagg
gaggtcgtcaacaagagcctgctggagtggctcaggcaaaatcccaactacacaatggag
atgcccgccttctcccacaacgttgggattctgcatggctttgcggagcgacccaagcag
aggaggcatcgctgcaaagaccccagcaagctggatgtgaactcgctgaccggggaggag
agggtccctgtagtgcacaagggcacagggaggaggctgggcggtgcaatggctccagcc
attaaggagctgtcccggtggctggatgccaatgcagagtatgctgtgacaccagattgg
gctgagatcgtcaagcactcagggtttctcccggaagacaagttcagccgcatcctcaca
gagccagtcttcagagacccgggccccaggaggagaggcaggcgtccccgcagcgaagtt
gtcaaggcagccggagccatcccagactccccttctgcgatggggcccttgttcatgaac
ggactgatcagtggcatggacttggtgagcctccagaacctaaggaacatgcaggggatc
cccttgactggactcatgggtttcccgcatgggtttgctacagcgcttcctgctggggaa
gagggcaagggcgggctgaacatgttgcccatgatgctgcatggcatggccgctgtccag
ccgcacatgttcagcgtcagtggactcctgaagccggcagccactgcagcaaccagcagc
accaccgtcaccagcagcagcacatcgccttcttcctgcaaggtagagaaggaccctgtg
gacgcacccaaaagagaggagtcggaggagaagcagtgtgccaacagcaccagcagccac
cctgagcccacagtaactgcgagcggaccgctggctttcaatccttttctgatcccgggc
gtgtctcacgggctgctgtacccgcacatgttcctcccgcacggtgtaagcatggcgctg
cctggcgtgcagcagaccagctcctcggaggagagccccaagagcaagaagaggaatgtg
aaggaggacgaggctgcagatgaggctacctctcagactgagacccctccagagacccag
aaccaaaccagcacagaacaggagccgcccccgctgcccgcagggaactgtgcagagcaa
acagctgaggagggggagggattactatag
DBGET
integrated database retrieval system
