Polyodon spathula (Mississippi paddlefish): 121307800
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Entry
121307800 CDS
T07273
Name
(RefSeq) retinoblastoma-like protein 1
KO
K04681
retinoblastoma-like protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04110
Cell cycle
pspa04218
Cellular senescence
pspa04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121307800
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121307800
04218 Cellular senescence
121307800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121307800
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
121307800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
121307800
NCBI-ProteinID:
XP_041096013
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Position
59:complement(447889..459093)
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AA seq
1083 aa
AA seq
DB search
MRGAKSDSNSGPGPESGKDEANQVRKSLDALCQELNMDEETAAEALQNFTAIWDTYTLEG
DVIHWLACSLYAACRRGSTPTVGKGVMEGNFVSLTRILRSSKLSLIQFFSKMKKWADMSS
LSQEFRERIERLERNFEVSTVIFKKFEPIFLDMFQNPQEEPPKIPRSRKQRRLPCHISDV
FKFCWTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCPNRRDLINPNFKGLPAD
YHDPDYTPPEEPPCIIEQLCELHDGLVVEAKGIKEHYFKPYIFKLFERQILKGNDEFFTE
MLDVPYFTGNNKAVNKEYEEYVLTVGDFDERVFLGADADEEIGTPRKSALEFPGGKLSAR
MQVECNLQQHFEKTRSFAPSTPLTGRRYLREKETMVTPVSSATQSVSRLQSMVLGLKNAP
SEQLLQIFSSCSRDPSETILNKVKSLGETFRRHYTRDTDEQPGSHMDFADNRLKLAEILY
YKILENVMAQETRRLHGKDMAVLLEQDIFHHSLVACCLEVVLFAYSSQRTFPWIINVFKL
RPFYFYKVIEVVIRSEEGLSRDMVKHLNSIEEQILESRAWSQDSALWECLSAAQNKVPTC
EEVTFPSNFESVNGSGGLSHLPMAPLSPVVHPRLKEVRTDLGGSVRRDVPPSPISVHDRY
SSPMAGSAKRRLFGEDPSSGFPVSKISFSQGGGLKIIHTPSSPRDTAPLPPGCTLVTMAT
ATVTTTNGQKVMIPVKGVANETGGITFIPVGLNTADQQKGVDSSSPTPLSAQALLGASPT
RSRGAVAQEAQPASSKPKKTGSLALFFRKVYHLASVRLRDLCLKLDISAELRRKIWTCFE
FSLVHCTDLMKDRHLDQLLLCAVYILAKVTKEDRSFQDIMKCYRSQPQATSHVYRSVLLK
KAAKPPQPDANNAEGHEERMDCEVESKEGSPTDNRIDPADDRGDLIQFYNSVYILRIKSF
AMKYAITNLDHRMEAPPLSPFPSVKSLPLSPRRISQRHSIYVSPHKNGSCLTPVSAMTYR
FNGSPSKDLRDINNMIKQGERMSKKRAFTMDSDSESPAKRLRQESDDVLLKRLQDVVSER
ANH
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgctaaaagcgattcgaattccggacccggacccgagtctggaaaggatgag
gcgaaccaggttcggaaaagtttagatgcgctgtgccaagagttgaatatggacgaggag
acagcggctgaagccttgcaaaatttcacagcgatctgggacacatacactctggaggga
gacgtgattcactggctggcctgctcgttgtacgctgcttgccgcagaggctccactcct
acagtggggaagggtgtgatggaggggaactttgtgtcactgaccagaattctgcgctct
tcaaaattaagtttaattcagttcttcagtaagatgaagaaatgggcggacatgtccagt
ttgtcgcaagagtttcgagaacgcattgagcgcctggagagaaacttcgaagtgtccacg
gtcatttttaagaaatttgagccgatcttcctggacatgtttcaaaacccacaggaagag
cccccaaagatcccgcggagcagaaaacagagacgccttccctgccatatcagtgatgtc
tttaaattctgctggaccctgtttgtgtacacgaaaggtaacttccgcatgatcggtgat
gatttggtgaattcctatcatcttctgctttgctgcctggacttggttttcggtaatgcg
ttgctgtgtccaaacaggagggatctcatcaatcctaattttaaagggttgccagcggat
taccatgaccctgactacactccccctgaggagcctccctgcatcatcgagcagctgtgt
gaactgcatgacgggctggtggtggaagccaagggcataaaagagcactactttaaacca
tacatcttcaagctgttcgagagacagattttaaaagggaatgatgagtttttcacagaa
atgttggatgttccatatttcacaggcaacaataaagcggtcaacaaggagtatgaagag
tacgttctgacggttggggatttcgacgagagggtgtttttgggagccgatgctgatgag
gaaatcggaactcctcggaagtcagctctggaattccctggagggaagctgtctgcgagg
atgcaggtggaatgcaaccttcagcagcattttgaaaagacgcggtcttttgcaccctcg
actccattgacaggacgccggtacctgagagagaaggagaccatggtgacgcccgtttcc
tccgcaacacagagcgtcagccgcttgcagagcatggtgctggggctgaagaacgctccc
agtgagcagctgctgcagatcttcagctcttgttcccgggaccccagcgaaaccatttta
aacaaagtaaagagcctgggagagactttccgtcgacactatacaagagacacagatgag
cagcccggctctcatatggactttgctgacaacagattgaagctagccgagatcctttat
tataaaattcttgagaacgtcatggcacaggaaacgcgaaggctgcacggaaaagacatg
gcagtgttgctggagcaggatatatttcaccactctctggtggcttgctgcctggaggtt
gtcctttttgcatacagctctcagcgcactttcccctggatcattaatgtcttcaagctc
aggcctttctacttctataaggttatagaggttgtgatccgatccgaggaggggctgtcc
cgggacatggtgaagcatctgaacagcatcgaggagcagatcctggagagccgtgcatgg
agtcaggactctgcgctgtgggagtgtctgagtgcggcgcagaacaaagtgcctacctgt
gaggaggtgacctttcctagcaattttgaaagtgtaaacggcagcgggggtctgtctcac
ctgcccatggcgcccctttctccagtcgttcaccctcgtcttaaagaagtgaggaccgac
ctgggcgggagcgtgagacgagatgtcccgccttcgcccatttcggtacacgatcgatac
agctctccaatggctggcagtgccaagaggcgtctgtttggagaggacccctcctcggga
ttcccggtgagcaagatctccttctctcaggggggggggctgaagatcatccacaccccc
tcctccccaagagacactgcccctctcccccctgggtgcacgctggtcactatggcaaca
gctacggtaaccacgacaaatggacagaaggtcatgatacctgtgaaaggagtggctaat
gagactgggggcatcaccttcatacccgtggggttgaacactgctgaccagcagaagggt
gttgacagcagcagcccgaccccgctctctgctcaagcactgctcggtgcgtctccgaca
cgctctcgaggggctgtagcgcaagaggctcagccagcgtctagcaagcccaagaagact
ggctctctggcgctgttcttcagaaaggtttatcacttggcgagtgtgcggctgcgggac
ctgtgtctgaagctggatatttctgcagagttaaggaggaagatctggacctgctttgag
ttctccctcgtccactgcactgacctaatgaaggacagacacttggaccagctactgctc
tgtgccgtctacatactggcaaaggtcacaaaagaagaccgatcattccaggatataatg
aaatgttaccggagtcagccacaggccaccagtcatgtgtataggagcgttctgttgaag
aaagcagccaaaccaccacagcctgatgccaacaatgctgaggggcatgaagagaggatg
gactgtgaagttgaaagtaaagaaggttccccgacagacaatcgcattgatccagcagat
gacagaggcgacctcatccaattctacaattcagtatacatactgcgaattaaatcgttt
gcaatgaagtatgccatcactaatctggaccataggatggaggcaccccccttgtctccg
ttcccatctgttaaatccctcccgctctctccccgccgtatatcacagagacactctatc
tatgtgtctccacacaagaatgggtcctgtctcacccctgtctctgccatgacctacaga
tttaacggcagcccttcaaaggatctgcgagatatcaacaacatgatcaagcagggagag
cgaatgagcaagaagcgagcttttactatggacagcgactctgaatcgccggctaaacgg
ctgcgtcaggaaagcgacgatgtcctgctgaagcggctgcaggatgtcgtaagcgagagg
gccaatcactga
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